Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP002416	665,962	T→C	intergenic (+88/‑283)	Clo1313_0602 → / → Clo1313_0603	transposase mutator type/YD repeat protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP002416	665,962	0	T	C	100.0%	40.7 / NA	15	intergenic (+88/‑283)	Clo1313_0602/Clo1313_0603	transposase mutator type/YD repeat protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (8/7);  total (8/7)

CTTTGTCAAATTTTTCTTTTGTAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACTGAAAGGCAAAACATA  >  CP002416/665941‑666106                      |                                                                                                                                                 cTTTGTCAAATTTTTCTTTTGCAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACt                 >  1:594564/1‑151 (MQ=14)  tttGTCAAATTTTTCTTTTGCAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACTg                <  1:1586722/151‑1 (MQ=14)  tttGTCAAATTTTTCTTTTGCAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACTg                >  1:2446207/1‑151 (MQ=14)    tGTCAAATTTTTCTTTTGCAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACTGaa              >  1:1130079/1‑151 (MQ=18)    tGTCAAATTTTTCTTTTGCAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACTGaa              <  1:48662/151‑1 (MQ=18)      tCAAATTTTTCTTTTGCAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACTGAAAg            <  1:1270622/151‑1 (MQ=21)       cAAATTTTTCTTTTGCAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCTAGTCTTAAAATATATTTAAATACTAACATAGAAGGAGAATTAGTTTACACAAAAATATTTACACTGCCACTGAAAgg           <  1:2209777/151‑1 (MQ=255)       cAAATTTTTCTTTTGCAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACTGAAAgg           <  1:2349679/151‑1 (MQ=25)       cAAATTTTTCTTTTGCAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACTGAAAgg           <  1:2420773/151‑1 (MQ=25)       cAAATTTTTCTTTTGCAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACTGAAAgg           >  1:2568686/1‑151 (MQ=25)        aaaTTTTTCTTTTGCAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACTGAAAGGc          >  1:143760/1‑151 (MQ=25)            ttttCTTTTGCAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACTGAAAGGCaaaa      >  1:2051866/1‑151 (MQ=255)              ttCTTTTGCAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACTGAAAGGCAAAACa    >  1:2152885/1‑151 (MQ=255)              ttCTTTTGCAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACTGAAAGGCAAAACa    >  1:303883/1‑151 (MQ=255)                cTTTTGCAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACTGAAAGGCAAAACata  <  1:2297978/151‑1 (MQ=255)                      |                                                                                                                                                 CTTTGTCAAATTTTTCTTTTGTAAGAATTTCTTATCAGAAATTCTTTTGAATCTATAAAATTTGACAAAGCAGACTTTCGAGTCTTAAAATATATTTAAATACTAACATAGAAGGAAAATTAGTTTACACAAAAATATTTACACTGCCACTGAAAGGCAAAACATA  >  CP002416/665941‑666106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑