Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0024161,391,6180AT32.8% 249.1 / 49.6 134intergenic (‑25/+167)Clo1313_1168/Clo1313_1169hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (20/70);  new base T (44/0);  total (64/70)
Fisher's exact test for biased strand distribution p-value = 3.89e-20
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 135 total aligned reads displayed.

AACCAACCGCCAATTCCAGTTGGACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCACTCTGGATTAGGCTTAAAGTCTTCCAATAACCTTAC  >  CP002416/1391472‑1391767
                                                                                                                                                  |                                                                                                                                                          
aaccaaccGCCAATTCCAGTTGGACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATgg                                                                                                                                                         >  1:807234/1‑150 (MQ=255)
 accaaccGCCAATTCCAGTTGGACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATggg                                                                                                                                                        <  1:807206/150‑1 (MQ=255)
  ccagccGCCAATTCCAGTTGGACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGt                                                                                                                                                       <  1:807615/146‑1 (MQ=255)
   caaccGCCAATTCCAGTTGGACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTg                                                                                                                                                      <  1:807399/150‑1 (MQ=255)
     accGCCAATTCCAGTTGGACATAAAGCTACTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑Ac                                                                                                                                                   <  1:807204/150‑1 (MQ=255)
        gCCAATTCCAGTTGGACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTGGGGG‑ACCGa                                                                                                                                                >  1:807236/1‑150 (MQ=255)
            aTTCCAGTTGGACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAAc                                                                                                                                            <  1:807200/150‑1 (MQ=255)
              tCCAGTTGGACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCa                                                                                                                                          <  1:807423/150‑1 (MQ=255)
                cAGTTGGACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTGGGGG‑ACCGACAACCAgg                                                                                                                                        >  1:808713/1‑149 (MQ=255)
                cAGTTGGACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTGGGGG‑ACCGACAACCAGa                                                                                                                                        >  1:807238/1‑150 (MQ=255)
                 aGTTGGACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑t                                                                                                                                      <  1:807198/150‑1 (MQ=255)
                 aGTTGGACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑t                                                                                                                                      <  1:807196/150‑1 (MQ=255)
                   ttGGACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑ttt                                                                                                                                    <  1:807192/150‑1 (MQ=255)
                     ggACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTTGGGG‑ACCGGCAACCCAA‑ttttt                                                                                                                                  >  1:803285/1‑150 (MQ=255)
                     ggACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑ttttt                                                                                                                                  <  1:807383/150‑1 (MQ=255)
                        cATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTaaa                                                                                                                               <  1:807190/150‑1 (MQ=255)
                        cATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGCTTTATTGGTG‑ACCGGCAACCAGAATTTTTaa                                                                                                                                >  1:803301/1‑150 (MQ=255)
                          tAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATGTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACt                                                                                                                             <  1:807571/150‑1 (MQ=255)
                             aGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTTGGTG‑AGCGACAACAAGA‑TTTTTTAACT‑Att                                                                                                                         >  1:803399/1‑150 (MQ=255)
                             aGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTGGGTG‑ATCGAAAACACGA‑TTTTTTAACT‑aat                                                                                                                         >  1:811189/1‑148 (MQ=255)
                             aGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑Att                                                                                                                         <  1:807188/150‑1 (MQ=255)
                              gctgctACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTg                                                                                                                        <  1:807731/150‑1 (MQ=255)
                               ctgctACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGc                                                                                                                       <  1:807715/150‑1 (MQ=255)
                               ctgctACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGc                                                                                                                       <  1:807184/150‑1 (MQ=255)
                                tgctACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCa                                                                                                                      <  1:807182/150‑1 (MQ=255)
                                  ctACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCata                                                                                                                    <  1:807180/150‑1 (MQ=255)
                                      ttCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑GCCCACAAACAGA‑TTTTTTAACT‑ATTGTATAtttt                                                                                                                >  1:807242/1‑148 (MQ=255)
                                        cAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATAttcttt                                                                                                              <  1:807389/150‑1 (MQ=255)
                                         aGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATAttctttc                                                                                                             <  1:807176/150‑1 (MQ=255)
                                           ggCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTg                                                                                                           <  1:807609/150‑1 (MQ=255)
                                           ggCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTg                                                                                                           <  1:807174/150‑1 (MQ=255)
                                           ggCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTg                                                                                                           <  1:807172/150‑1 (MQ=255)
                                             cTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATTGGGG‑AACGACAAACAGA‑TTTTTTAACT‑ATTTCATAtttttttttcc                                                                                                         >  1:807244/1‑145 (MQ=255)
                                               gATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑AACGACAACCAGAATTTTTAAA‑T‑ATTTCATATTCTTTCTGcctc                                                                                                       >  1:807246/1‑150 (MQ=255)
                                                   tATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATTGGTG‑ACCGACAACCCCA‑TTTTTTAACT‑TATGCATATTTTTTCTtcctccctc                                                                                                   >  1:808443/1‑147 (MQ=255)
                                                     ttCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCctt‑ctt                                                                                                <  1:807168/150‑1 (MQ=255)
                                                       ccatccaGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTAc                                                                                              <  1:807166/150‑1 (MQ=255)
                                                        catccaGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTAcc                                                                                             <  1:807729/150‑1 (MQ=255)
                                                        catccaGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTAcc                                                                                             <  1:807377/150‑1 (MQ=255)
                                                        catccaGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGGG‑ACCGACAACCAGA‑TTTTTTAACT‑ATTTCATATTTTTTTTGCCTCCTT‑CTTAcc                                                                                             >  1:803309/1‑150 (MQ=255)
                                                          tccaGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTTGGTG‑ACCGGCCAACAGA‑TTTTTTAAAT‑ATTTCATATTTTTTTTTCCTCCCT‑CTTTcccc                                                                                           >  1:803507/1‑149 (MQ=255)
                                                           ccaGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTTGGGG‑ACCGACAACCAGA‑TTTTTTAAAT‑ATTGCATATTTTTTTTTCCTCCTT‑CTTTccccc                                                                                          >  1:826852/1‑148 (MQ=255)
                                                            caGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTTGGGG‑ACCGACAAACAGA‑TTTTTTAACT‑ATTGCATATTCTTTTTGCCTCCTT‑CTTAcccccc                                                                                         >  1:807262/1‑147 (MQ=255)
                                                             aGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTAcccgccc                                                                                        <  1:807521/150‑1 (MQ=255)
                                                              gCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTTGGTG‑ACCGACAACCAGA‑TTTTTTAAAT‑ATTGCATATTCTTTCTTCCTCCCT‑CTTAcccgcccg                                                                                       >  1:807264/1‑150 (MQ=255)
                                                              gCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTAcccgcccg                                                                                       <  1:807164/150‑1 (MQ=255)
                                                                  tctcTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTTCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACt                                                                                   >  1:803303/1‑150 (MQ=255)
                                                                    tctTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTGGGTG‑ACCGACAACCAGA‑TTTTTTAACT‑ATTTCATATTCTTTCTTCCTCCTT‑CTTTCCCCCCCGGACTtg                                                                                 >  1:803397/1‑150 (MQ=255)
                                                                    tctTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTtg                                                                                 <  1:807160/150‑1 (MQ=255)
                                                                      ttACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTtgt‑g                                                                              <  1:807158/150‑1 (MQ=255)
                                                                       tACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑Ga                                                                             <  1:807156/150‑1 (MQ=255)
                                                                        aCCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GAc                                                                            <  1:807152/150‑1 (MQ=255)
                                                                        aCCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGATTTTTTGGTG‑AACGACAACCAGA‑TTTTTAAACT‑ATTATCTATTCTTTTTGCCTTCCT‑CTTACCCCTCCCGACTTGT‑Gag                                                                            >  1:826830/1‑149 (MQ=255)
                                                                              tCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTTGGTG‑ACCGACAACCAGA‑TTTTTTAACT‑ATTTCCTATTCTTTCTTCCTCCTT‑CTTACCCCCCCCGGCTTGT‑GGCCCGGcc                                                                      >  1:808697/1‑150 (MQ=255)
                                                                               cAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTTGGGG‑AACGACAACCCGA‑TTTTTTAACT‑ATTGCATATTCTTTCTTCCTCCTT‑CTTACCCGCCCCGACTTGT‑GACCCGGCCa                                                                     >  1:807266/1‑150 (MQ=255)
                                                                               cAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCa                                                                     <  1:807459/150‑1 (MQ=255)
                                                                               cAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCa                                                                     <  1:807411/150‑1 (MQ=255)
                                                                                 gCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTGGGAG‑AACGCCCACCAGACTTTTTAAA‑T‑TTTACATATTCTTTTTTGCTTCTT‑TTTACCCCCCCCGACTTGG‑TACCGGGTCAcc                                                                   >  1:807250/1‑150 (MQ=255)
                                                                                  cGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTGTGTG‑ACCCCCAACCAGA‑TTTTTTAACT‑ATTGCATATTTTTTCTGCCTCCTT‑CTTACCCCCCCCGACTTGT‑GAGCGGGGCAccc                                                                  >  1:808769/1‑149 (MQ=255)
                                                                                  cGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTGGGGG‑ACCGACAAACAGA‑TTTTTTAAAT‑ATTTCATATTTTTTTTTCCTCCTT‑CTTTCCCGCCCGGGCTTGT‑GACCGGGCCCCCg                                                                  >  1:826846/1‑150 (MQ=255)
                                                                                  cGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATTGGTG‑ACCGACAACCCGA‑TTTTTTAAAT‑ATTGCATATTCTTTTTGCCTCCTT‑CTTTCCCGCCCGGACTTTT‑GACCCGGCCACCg                                                                  >  1:807252/1‑150 (MQ=255)
                                                                                   gAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTAGGGG‑ACCGACAAACAGA‑TTTTTTAAAT‑ATTTCATATTTTTTTTTCCTCCCT‑CTTACCCCCCCCGACCTGT‑GACCGGGCCAcccc                                                                 >  1:803287/1‑148 (MQ=255)
                                                                                   gAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTTAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCCCCCCGACGTGT‑TACCGGGCCAcccc                                                                 >  1:803489/1‑148 (MQ=255)
                                                                                    aaaTAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCa                                                                <  1:807365/150‑1 (MQ=255)
                                                                                     aaTAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATCGGTG‑GCCCGCAACCAGA‑ATTTTTAACT‑ATTTCATATTCTTTTTGCCTCCTT‑CTTACCCTCCCCGTCCTGT‑TACCGGGCCCCCGCAt                                                               >  1:826844/1‑150 (MQ=255)
                                                                                      aTAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTGGGGG‑ACCGACAACCAGA‑TTTTTTAACT‑ATTGCATATTTTTTCTGCCTCCTT‑CTTACCCCCCCGGGCTTTT‑GAACGGGCCACCGCAtt                                                              >  1:807254/1‑150 (MQ=255)
                                                                                      aTAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCAtt                                                              <  1:807150/150‑1 (MQ=255)
                                                                                         gAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTGGGGG‑ACCGACAACCAGA‑TTTTTTAACT‑ATTGCCTATTCTTTTTGCCTCCTT‑CTTACCCCCCCCGGCTTGT‑GACCCGGCCACCGCATTAcc                                                           >  1:803387/1‑150 (MQ=255)
                                                                                           aTTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTTGGTG‑ACCGACAACCCGA‑TTTTTTAAAT‑ATTTCATATTTTTTTTGCCTCCTT‑CTTTCCCCCCCCGGCTTGT‑GACCGGGGCACCGCCTTAcccg                                                         >  1:807270/1‑148 (MQ=255)
                                                                                            ttCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCgga                                                        <  1:811192/150‑1 (MQ=255)
                                                                                             tCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCggag                                                       <  1:807591/150‑1 (MQ=255)
                                                                                              cTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTTGGGG‑ACCGACAACCCAA‑TTTTTTAACT‑ATTGCCTATTTTTTTTGCCTCCCT‑CTTACCCCCCCCGGCTTGT‑GGCCGGGCCCCCGCCTTACCggggg                                                      >  1:807274/1‑147 (MQ=255)
                                                                                               ttGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTGGGTG‑ACCGACAACCAGA‑TTTTTTAACT‑ATTTCATATTCTTTCTGCCTCCTT‑CTTTCCCCCCCGGACTTGT‑GACCGGGGCAcccccctacccggggg                                                     >  1:822390/1‑136 (MQ=255)
                                                                                                 gATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTTGGTGGACC‑ACAACCAAA‑TTTTTTAAAT‑ATTTCATATTTTTTTTGCCCCCTTTCTTACCCCCCCGG‑CTTGT‑GACCGGGGCACCCCTTTAcccgtgggag                                                   >  1:803491/1‑142 (MQ=255)
                                                                                                      atTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTTGGGG‑ACCGACAACCAGA‑TTTTTTAACT‑ATTTCATATTTTTTCTGCCTCCCT‑CTTTCCCGCCCCGGCTTGT‑GACCGGGCCCCCCCCTTACCGGAGGGagaggcg                                              >  1:807276/1‑147 (MQ=255)
                                                                                                         aaaTACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTTCATATTTTTTTTGCCTCCTT‑CTTACCCCCCCGGACTTGT‑GACCGGGCCCCCCCATTACCGGAGGAagaggcggtc                                           >  1:811186/1‑144 (MQ=255)
                                                                                                           aTACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTTGGTG‑ACCGACAACCAGA‑ATTTTTAACT‑ATTTCATATTTTTTTTGCCTCCTT‑CTTACCCCCCCCGACTTGT‑GACCGGGGCCCCCCCTTACCCGGGGAAGAGTCGTTCCg                                         >  1:807280/1‑150 (MQ=255)
                                                                                                            tACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATTGGGG‑AACGACAACCAGA‑TTTTTTAAAT‑ATTTCATATTTTTTTTGCCTCCCT‑CTTTCCCCCCCCGGCCTGT‑GACCCGGCCACCGCATTACCGGGGGAAGAGGCGTTCCGt                                        >  1:822388/1‑150 (MQ=255)
                                                                                                               ctctTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATTGGTG‑ACCCATAACCAGA‑TTTTTTAAAT‑ATTTCATATTTTTTTTTCCTCCTT‑CTTACCCCCCCCGACTTTTTGACGGGGCC‑CCCCATTACCGGAGGGAGAGTCggttcgtccc                                     >  1:826828/1‑141 (MQ=255)
                                                                                                               ctctTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCAc                                     <  1:807557/150‑1 (MQ=255)
                                                                                                               ctctTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCAc                                     <  1:811188/150‑1 (MQ=255)
                                                                                                                 ctTTGCCATTTCTGCCTCCTTTATGGCGGTTTTTTGGGTG‑AACCACAACCAGA‑TTTTTTAACT‑ATTGCATATTTTTTTTTCCTCCTT‑CTTACCCCCCCCGGCTTGT‑GACCCGGCCACCGCATTACCGGGGGAAGAGGCGTTCCGTCActc                                   >  1:826832/1‑150 (MQ=255)
                                                                                                                  tttGCCATTTCTGCCTCCTTTATGGCGGTTTTTTGGGTG‑ACCGACAAACAGA‑TTTTTTAACT‑ATTTCATATTTTTTCTGCCTCCCT‑CTTTCCCCCCCGGACTTGT‑GACCGGGCCCCCGCCTTACCCGGGGGAGAGGCGTTCCCTCActct                                  >  1:826850/1‑150 (MQ=255)
                                                                                                                   ttGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCACTCTg                                 <  1:811182/150‑1 (MQ=255)
                                                                                                                     gCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGGG‑ACCGACAACCAGG‑TTTTTTAACT‑ATTTCATATTTTTTCTGCCTCCTT‑CTTTCCCCCCCGGACTTTT‑GGCCGGGCCCCCGCCTTACCGGGGGGAGAGTCGTTCCGTCACTCTGGa                               >  1:826836/1‑150 (MQ=255)
                                                                                                                      ccATTTCTGCCTCCTTTATGGCGGTTTTTTTGGTG‑GCCGACAACCCAA‑TTTTTTAACTCATT‑CATATTCTTTCTTCCTCCCT‑CTTTCCCCCCCCGGCTTGT‑GTCCCGGCCACCCCCTTACCGGGGGAAGAGTCGGTCCGTCCCTCTGGAt                              >  1:808701/1‑150 (MQ=255)
                                                                                                                       cATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCACTCTGGAtt                             <  1:807980/150‑1 (MQ=255)
                                                                                                                       cATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCACTCTGGAtt                             <  1:807415/150‑1 (MQ=255)
                                                                                                                        aTTTCTGCCTCCTTTATGGCGGTTTTTTTGGTG‑ACCGACAACCAGA‑TTTTTTAAAT‑ATTTCATATTTTTTTTTCCTCCTT‑CTTACCCCCCCGGACTTGT‑GACCGGGCCACCGCCTTACCGGAGGAAGAGTCGTTCCGTCACTCTgggcta                            >  1:4298916/1‑146 (MQ=255)
                                                                                                                        aTTTCTGCCTCCTTTATGGCGGTTTTTTTGGGG‑ACCGACAACCAGA‑TTTTTTAAAT‑ATTTCATATTCTTTTTGCCTCCCT‑CTTTCCCCCCCGGACTTTT‑GACCGGGCCCCCCCATTTCCCGGGGGAGAGTCGTTCCCTCACTCTgggttt                            >  1:803419/1‑146 (MQ=255)
                                                                                                                        aTTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCACTCTGGATTa                            <  1:803428/150‑1 (MQ=255)
                                                                                                                          ttCTGCCTCCTTTATGGCGGGTTTTTTGGTG‑ACCGACAAACCGA‑TTTTTTAACT‑ATTTTCTTTTTTTTTTTCCTCCTT‑CTTACCCCCCCCGACTTTT‑GACCCGGCCCCCCCCTTACCGGGGGCAGAGTCGGTCCGCTACTCTggttttgg                          >  1:808763/1‑144 (MQ=255)
                                                                                                                                 tcctTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCACTCTGGATTAGGCTTAAAg                   <  1:807707/150‑1 (MQ=255)
                                                                                                                                  cctTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCACTCTGGATTAGGCTTAAAGt                  <  1:807391/150‑1 (MQ=255)
                                                                                                                                        tGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CGTTCCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCACTCTGGATTAGGCTTAAAGTCTTCCa            <  1:807369/150‑1 (MQ=255)
                                                                                                                                         ggCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCACTCTGGATTAGGCTTAAAGTCTTCCaa           >  1:803328/1‑150 (MQ=255)
                                                                                                                                          gCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCACTCTGGATTAGGCTTAAAGTCTTCCAAt          <  1:803424/150‑1 (MQ=255)
                                                                                                                                             gTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCACTCTGGATTAGGCTTAAAGTCTTCCAATAAc       >  1:803330/1‑150 (MQ=255)
                                                                                                                                                ttATGGGTT‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCGCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCACTCTGGATTAGGCTTAAAGTCTTCCAATAACCtt    <  1:807543/150‑1 (MQ=255)
                                                                                                                                                 tATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCACTCTGGATTAGGCTTAAAGTCTTCCAATAACCTTa   <  1:803422/150‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                          
AACCAACCGCCAATTCCAGTTGGACATAAAGCTGCTACTTCAGGGCTGATGTATTCCATCCAGCCGTCTCTTACCATGTCAGCGAAATAGAATTCTTGATATATTAAATACCTCTTTGCCATTTCTGCCTCCTTTATGGCGGTTTTATGGGTG‑ACCGACAACCAGA‑TTTTTAAACT‑ATTGCATATTCTTTCTGCCTCCTT‑CTTACCCGCCCGGACTTGT‑GACCGGGCCACCGCATTACCGGAGGAAGAGTCGTTCCGTCACTCTGGATTAGGCTTAAAGTCTTCCAATAACCTTAC  >  CP002416/1391472‑1391767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑