| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP002416 | 1,269,424 | (A)7→8 | intergenic (+108/‑4134) | Clo1313_1060 → / → Clo1313_1065 | Hedgehog/intein hint domain protein/Domain of unknown function DUF1910 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP002416 | 1,269,424 | 1 | . | A | 96.0% | 328.4 / 5.1 | 99 | intergenic (+108/‑4134) | Clo1313_1060/Clo1313_1065 | Hedgehog/intein hint domain protein/Domain of unknown function DUF1910 |
| Reads supporting (aligned to +/- strand): ref base . (2/2); new base A (46/49); total (48/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.82e-01 | |||||||||||
Only 100 of 112 total aligned reads displayed.
GGTTAAACAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAA‑GATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATACTCTTTAGGTAGTCATCCGGATG > CP002416/1269276‑1269573 | ggTTAAACAGCAATGGTGAAATAATTGGATTCTGGCTATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑Taaaa‑aaaa > 1:186199/1‑149 (MQ=255) gTTAAACAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑Taaaa‑aaaag < 1:142362/150‑3 (MQ=255) gTTAAACAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑Taaaa‑aaaag < 1:142140/150‑3 (MQ=255) gTTAAACAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑Taaaa‑aaaag > 1:142856/1‑148 (MQ=255) tAAACAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑Taaaa‑aaaagat < 1:141862/150‑5 (MQ=255) tAAACAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑Taaaa‑aaaagat > 1:142337/1‑146 (MQ=255) ccAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGt < 1:142219/149‑1 (MQ=255) aGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAGCAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTa > 1:2447301/1‑150 (MQ=255) aGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTa > 1:142538/1‑150 (MQ=255) aaTGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTc > 1:142560/1‑150 (MQ=255) aaTGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTc > 1:142345/1‑150 (MQ=255) aaTGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTc > 1:142343/1‑150 (MQ=255) aaTGGAGAAATAATTGGATTCTGGCCATAAATAACACATGAAAAGGAGATGATGGTATGAGAGATCCGTTCTTCAGTGAAAGGTATTTATTAGAAACAATAGAATATGACACAGAAGGAATTAGAAAAAG‑AAAAACAAA‑GATTGGTAttg > 1:142740/1‑149 (MQ=14) tGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTg > 1:142347/1‑150 (MQ=255) tGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGaaa > 1:142349/1‑150 (MQ=255) tGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGaaa > 1:142351/1‑150 (MQ=255) aataatTTGATTTTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAATTTATTTATTAGAAACAATAGAATATGACAAAGAAGTAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAgat < 1:141910/150‑1 (MQ=17) ataatTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAgatg < 1:142211/150‑1 (MQ=255) taatTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAgatga < 1:142207/150‑1 (MQ=255) taatTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAgatga < 1:142205/150‑1 (MQ=255) aatTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATTATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAgatgat < 1:2455606/150‑1 (MQ=255) aatTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAgatgat < 1:142203/150‑1 (MQ=255) aatTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAgatgaa > 1:142600/1‑149 (MQ=255) ttGGATTCTGGCCATAAATAACAAATGAAAATGAGATGATGGTATGATAGATCCGTTATGCAGTGAAAGTTATTTATTAGAACCAATAGAATATGCCAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATTatat < 1:2488395/150‑1 (MQ=17) ggATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATTAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATgg < 1:142419/150‑1 (MQ=255) ggATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATgg > 1:142421/1‑150 (MQ=255) agtcgtgcaagaaataaCAAATGAAAAGGAGATGATGGGATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAAAAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGaa < 1:142417/139‑1 (MQ=17) ttCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGaaa > 1:142423/1‑150 (MQ=255) tGGCCATAAATAACAAATGAAAAGGAGATGATGGCATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAGGAAAAA‑AAA‑GATTGTCATTCTGAAATATGATATGGAAAAAg > 1:2469162/1‑150 (MQ=17) gCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGt > 1:142766/1‑150 (MQ=255) ccATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGta > 1:142425/1‑150 (MQ=255) cATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGtat < 1:142413/150‑1 (MQ=255) taaataaCAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATAc < 1:142409/150‑1 (MQ=255) taaataaCAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATAc < 1:142411/150‑1 (MQ=255) aCAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGat < 1:142138/150‑1 (MQ=255) cAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGata < 1:142407/150‑1 (MQ=255) aaaTGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGatat < 1:142405/150‑1 (MQ=255) taTGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATc > 1:142564/2‑150 (MQ=255) aaaGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAg > 1:142534/1‑149 (MQ=255) aaGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAggg > 1:142427/1‑150 (MQ=255) aaGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAggg > 1:142429/1‑150 (MQ=255) aaGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAggg < 1:142403/150‑1 (MQ=255) atgatgGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAAAAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATc < 1:142158/150‑1 (MQ=255) tgatgGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCa < 1:142401/150‑1 (MQ=255) tgatgGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGAATACAAAGATATCCAAGGGATAATCa > 1:142522/1‑150 (MQ=255) atgGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCaaa < 1:142399/150‑1 (MQ=255) atgGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGAATACAAAGATATCCAAGGGATAATCaaa > 1:142433/1‑150 (MQ=255) ggTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGc > 1:142435/1‑150 (MQ=255) gagaTCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAAttt > 1:142437/1‑150 (MQ=255) ataTCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTa < 1:142395/148‑1 (MQ=255) tCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGc > 1:142608/1‑150 (MQ=255) ccGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCt > 1:142439/1‑150 (MQ=255) cGTTATGCAGTGAAAGTTATTTATTATAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTa > 1:142441/1‑150 (MQ=255) tGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTATGttt < 1:142144/150‑1 (MQ=255) gCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGtttt < 1:142393/150‑1 (MQ=255) cAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGttttt < 1:142428/150‑1 (MQ=255) aGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTa > 1:142443/1‑150 (MQ=255) gAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGAAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACat > 1:142898/1‑150 (MQ=255) gAAAGTTATTTATTAGAAACAATAGAATAGGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACat < 1:142567/150‑1 (MQ=255) aaaGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTAAata > 1:142604/1‑150 (MQ=255) aaaGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGAATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACata > 1:142694/1‑150 (MQ=255) ttatttatTAGAAACAATAGAATATGATAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCAAAATTTATGTTACGTTTTTTCATATGtt > 1:142852/1‑150 (MQ=25) atttattAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTa > 1:142445/1‑150 (MQ=255) tttattAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTAt < 1:142389/150‑1 (MQ=255) tttattAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTAt < 1:142391/150‑1 (MQ=255) tttattAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTAt > 1:142447/1‑150 (MQ=255) tattaGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGt < 1:142387/150‑1 (MQ=255) taGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGtata < 1:142385/150‑1 (MQ=255) aGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATaa < 1:142383/150‑1 (MQ=255) aGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATaa > 1:142453/1‑150 (MQ=255) aGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATaa > 1:142451/1‑150 (MQ=255) aaaCAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATAGCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAaca < 1:142381/150‑1 (MQ=255) aaCAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAacac < 1:142379/150‑1 (MQ=255) cAATAGAATATGACAAAGAAGGAATTTGTAAAAGGAAAAA‑AAA‑GATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACgg < 1:142156/150‑1 (MQ=255) cAATAGAATATGACAAAGAAGGAAGTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACgg < 1:142150/150‑1 (MQ=255) aTAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGaa < 1:142375/150‑1 (MQ=255) aTAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGaa < 1:142170/150‑1 (MQ=255) aGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATAGGTTTATGTATAACACGGAAAt > 1:142455/1‑150 (MQ=255) gACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACa > 1:142900/1‑150 (MQ=255) gACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACa < 1:141864/150‑1 (MQ=255) agaagGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTCCGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCaa < 1:2492397/150‑1 (MQ=255) agaagGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCaa > 1:142592/1‑150 (MQ=255) agaagGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCaa < 1:142364/150‑1 (MQ=255) gaagGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAACGCTTACAGCCaaa < 1:142308/150‑1 (MQ=255) aagGAATTTGTAAAAG‑TAAAA‑AAAAGATTGTCATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAAt > 1:142487/1‑150 (MQ=255) ggAATTTGTAAAAG‑TAAAA‑AAAAGATGGTTATTCTGAAAGATGATATTGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATAc < 1:142565/150‑1 (MQ=255) gAATTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATatt > 1:142840/1‑148 (MQ=255) aTTTGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATActct < 1:142563/150‑1 (MQ=255) tGTAAAAG‑TAAAA‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATACTCTTTa > 1:142489/1‑150 (MQ=255) gtaaaag‑taaaa‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATACTCtttcg > 1:142844/1‑148 (MQ=255) gtaaaag‑taaaa‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATACTCTTTAg > 1:142491/1‑150 (MQ=255) ggaaaag‑taaaa‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATACTCTTTAg < 1:142559/148‑1 (MQ=255) taaaag‑taaaa‑AAAAGATTGTTATGCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATACTCTTTAgg < 1:142436/150‑1 (MQ=255) aaag‑taaaa‑AAAAGATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATACTCTTTAGGTa > 1:142493/1‑150 (MQ=255) aagtaaaaa‑aaa‑GATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATACTCTTTAGGTAg < 1:142557/145‑1 (MQ=255) taaaaa‑aaa‑GATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATACTCTTTAGTTAGTCa > 1:142728/3‑150 (MQ=255) taaaaa‑aaa‑GATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATACTCTTTAGGTAGTCa < 1:142555/148‑1 (MQ=255) aaaa‑aaa‑GATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATACTCTTTAGGTAGTCATc > 1:142495/1‑150 (MQ=255) aaa‑GATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATACTCTTTAGGTAGTCATCCGGa < 1:142553/150‑1 (MQ=255) a‑GATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATACTCTTTAGGTAGTCATCCGGATg > 1:142848/1‑150 (MQ=255) | GGTTAAACAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTATTAGAAACAATAGAATATGACAAAGAAGGAATTTGTAAAAG‑TAAAA‑AAA‑GATTGTTATTCTGAAAGATGATATGGAAAAAGGTATACAAAGATATCCAAGGGATAATCAAAGCATAATTTATGCTACGTTTTTACATATGTTTATGTATAACACGGAAATGCTTACAGCCAAATACTCTTTAGGTAGTCATCCGGATG > CP002416/1269276‑1269573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |