BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP002416	= 3474171	144 (0.860)	65 (0.480)	57/242	3.6	36.9%	intergenic (‑737/+109)	Clo1313_2959/Clo1313_2961	CheW protein/integrase family protein
*	?	CP002416	= 3475049	105 (0.770)	65 (0.480)	57/242	3.6	36.9%	intergenic (‑209/‑192)	Clo1313_2961/Clo1313_2962	integrase family protein/transcriptional regulator, AraC family
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 160 total aligned reads displayed.

AACGCTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTA  >  CP002416/3474901‑3475196

aaCGCTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCa                                                                                                                                                    >  1:70232/1‑150 (MQ=255)

aaCGCTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCa                                                                                                                                                    <  1:71137/150‑1 (MQ=255)

  cGCTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCaaa                                                                                                                                                  <  1:71862/150‑1 (MQ=255)

   gCTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAg                                                                                                                                                 <  1:71133/150‑1 (MQ=255)

   gCTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAg                                                                                                                                                 >  1:71143/1‑150 (MQ=255)

    cTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGt                                                                                                                                                <  1:71894/150‑1 (MQ=255)

    cTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGt                                                                                                                                                >  1:70878/1‑150 (MQ=255)

    cTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGt                                                                                                                                                <  1:71131/150‑1 (MQ=255)

        tCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTTGCTTATTGCCAAAGTAACa                                                                                                                                            >  1:71147/1‑150 (MQ=255)

        tCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACa                                                                                                                                            >  1:70514/1‑150 (MQ=255)

         cAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACaa                                                                                                                                           >  1:71151/1‑150 (MQ=255)

          aaaCACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACaaa                                                                                                                                          >  1:71153/1‑150 (MQ=255)

          aaaCACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACaaa                                                                                                                                          <  1:71732/150‑1 (MQ=255)

            acacTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAAt                                                                                                                                        <  1:72090/150‑1 (MQ=255)

            acacTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAAt                                                                                                                                        >  1:70816/1‑150 (MQ=255)

             cacTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATg                                                                                                                                       >  1:71168/1‑150 (MQ=255)

              acTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATgg                                                                                                                                      <  1:70965/150‑1 (MQ=255)

               cTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATggg                                                                                                                                     <  1:70963/150‑1 (MQ=255)

                ttATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGc                                                                                                                                    >  1:70969/1‑150 (MQ=255)

                 tATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCa                                                                                                                                   >  1:126280/1‑150 (MQ=255)

                 tATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCa                                                                                                                                   <  1:70530/150‑1 (MQ=255)

                       tttCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGt                                                                                                                             >  1:70973/1‑150 (MQ=255)

                          cTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGtaat                                                                                                                          >  1:126282/1‑147 (MQ=255)

                          cTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTAc                                                                                                                          >  1:70975/1‑150 (MQ=255)

                           tAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTAca                                                                                                                         >  1:70979/1‑149 (MQ=255)

                           tAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACt                                                                                                                         >  1:70981/1‑150 (MQ=255)

                            aaattaataaATCTATCATAAAAATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAGAAAAATACTATTTAATATGAAGCCTGCTAAATATAATAATTTTCGCTTATTGCCATAGTAACAAAATGGGCATATTGTTACtt                                                                                                                        <  1:71992/146‑1 (MQ=255)

                            aaaGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCGTATTGTTACtt                                                                                                                        <  1:70959/150‑1 (MQ=255)

                            aaaGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTAcat                                                                                                                        >  1:71336/1‑148 (MQ=255)

                            aaaGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACtt                                                                                                                        >  1:70985/1‑150 (MQ=255)

                               gTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTaa                                                                                                                     <  1:71754/150‑1 (MQ=255)

                               gTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTaa                                                                                                                     <  1:71858/150‑1 (MQ=255)

                                taataaATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACATTaat                                                                                                                    >  1:71181/1‑149 (MQ=255)

                                 aataaATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTaaaa                                                                                                                   <  1:70592/150‑1 (MQ=255)

                                  ataaATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTaaaaa                                                                                                                  <  1:70891/150‑1 (MQ=255)

                                   taaATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTaaaaaa                                                                                                                 >  1:70893/1‑150 (MQ=255)

                                   taaATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACATTaataaa                                                                                                                 <  1:71177/150‑1 (MQ=255)

                                    aaaTCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAAc                                                                                                                >  1:70492/1‑150 (MQ=255)

                                     aaTCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACa                                                                                                               <  1:70574/150‑1 (MQ=255)

                                     aaTCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACATTaataaagt                                                                                                               >  1:71314/1‑148 (MQ=255)

                                      aTCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACATTaataaagtg                                                                                                              <  1:70544/150‑4 (MQ=255)

                                        cTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGa                                                                                                            >  1:70486/1‑150 (MQ=255)

                                          aTCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCTAAAGTAACAAAATGGGCATATTGTTACATTaataaagtgaaaa                                                                                                          <  1:71876/150‑8 (MQ=38)

                                          aTCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAt                                                                                                          >  1:70488/1‑150 (MQ=255)

                                            cATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAttt                                                                                                        <  1:70532/150‑1 (MQ=255)

                                             aTAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAtttt                                                                                                       >  1:70226/1‑150 (MQ=255)

                                             aTAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAtttt                                                                                                       >  1:70897/1‑150 (MQ=255)

                                             aTAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACATTaataaagtgaaaaatc                                                                                                       >  1:72366/1‑140 (MQ=38)

                                              tAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAttttt                                                                                                      >  1:70901/1‑150 (MQ=255)

                                               aaaTATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACATTaataaagtgaaaaatcga                                                                                                     >  1:71183/1‑138 (MQ=38)

                                                aaTATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTc                                                                                                    >  1:70903/1‑150 (MQ=255)

                                                 atatTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACATTaataaagtgaaaaatcgaca                                                                                                   <  1:71173/150‑15 (MQ=37)

                                                   attatAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCtt                                                                                                 >  1:70907/1‑150 (MQ=255)

                                                    ttatAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCttt                                                                                                <  1:70887/150‑1 (MQ=255)

                                                     tataAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTtc                                                                                               >  1:70214/1‑150 (MQ=255)

                                                                  cATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTtat                                                                                  >  1:70462/1‑150 (MQ=255)

                                                                   aTTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTtata                                                                                 <  1:70885/150‑1 (MQ=255)

                                                                      gTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATAttt                                                                              <  1:70558/150‑1 (MQ=255)

                                                                        tttttATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTtc                                                                            >  1:70909/1‑150 (MQ=255)

                                                                         ttttATACGAAAAAAATCAAAAAAAAATACTATATAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATAtttt                                                                             <  1:72086/148‑1 (MQ=255)

                                                                          tttATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTtctc                                                                          >  1:70804/1‑150 (MQ=255)

                                                                          tttATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTtctc                                                                          <  1:70881/150‑1 (MQ=255)

                                                                              taCGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTa                                                                      <  1:70877/150‑1 (MQ=255)

                                                                               aCGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTaa                                                                     <  1:71738/150‑1 (MQ=255)

                                                                                cGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTaaa                                                                    <  1:71736/150‑1 (MQ=255)

                                                                                 gAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTaaaa                                                                   >  1:70913/1‑150 (MQ=255)

                                                                                      aaaTCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTTCCAAAGTAACAAAATGGGCATATTGCTACTTTAAAAAACAGAAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTAt                                                              >  1:3995302/1‑150 (MQ=255)

                                                                                        aTCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTAttt                                                            <  1:71728/150‑1 (MQ=255)

                                                                                          cAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTcc                                                          <  1:70873/150‑1 (MQ=255)

                                                                                          cAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTcc                                                          >  1:70180/1‑150 (MQ=255)

                                                                                            aaaaaaaaTACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCct                                                        <  1:70871/150‑1 (MQ=255)

                                                                                            aaaaaaaaTACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCct                                                        >  1:70917/1‑150 (MQ=255)

                                                                                                aaaaTACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTcc                                                    >  1:70919/1‑150 (MQ=255)

                                                                                                     aCTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAg                                               <  1:71756/150‑1 (MQ=255)

                                                                                                     aCTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAg                                               >  1:70482/1‑150 (MQ=255)

                                                                                                             atatGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAAt                                       >  1:70923/1‑150 (MQ=255)

                                                                                                              tatGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATc                                      >  1:70925/1‑150 (MQ=255)

                                                                                                               atGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCt                                     >  1:70308/1‑150 (MQ=255)

                                                                                                               atGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCt                                     <  1:71748/150‑1 (MQ=255)

                                                                                                                tGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTg                                    <  1:71722/150‑1 (MQ=255)

                                                                                                                tGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTg                                    <  1:70867/150‑1 (MQ=255)

                                                                                                                 gAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGa                                   >  1:70210/1‑150 (MQ=255)

                                                                                                                  aaaCCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGaa                                  >  1:70510/1‑150 (MQ=255)

                                                                                                                         cTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCTATAATCTGAATTTgcgc                           <  1:70863/150‑1 (MQ=255)

                                                                                                                         cTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTgcgc                           >  1:70929/1‑150 (MQ=255)

                                                                                                                          tAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCa                          >  1:70202/1‑150 (MQ=255)

                                                                                                                          tAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCa                          <  1:70548/150‑1 (MQ=255)

                                                                                                                            aaTATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCAtt                        >  1:70933/1‑150 (MQ=255)

                                                                                                                            aaTATAATAATTTTCGCTTATTGCCAAAGCAACAAAATGGGCATATTGTTACTTTAAAAAACAGGACTTTTTTCCTTTCTCTTTATTCTTATATTTTCTCCTCAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCAtt                        >  1:126299/1‑150 (MQ=255)

                                                                                                                              tataATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTAc                      >  1:70935/1‑150 (MQ=255)

                                                                                                                               ataataATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACa                     <  1:70861/150‑1 (MQ=255)

                                                                                                                                taataaTTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACaa                    >  1:70939/1‑150 (MQ=255)

                                                                                                                                  ataatTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATc                  >  1:70112/1‑150 (MQ=255)

                                                                                                                                    aatTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGa                <  1:70582/150‑1 (MQ=255)

                                                                                                                                     atTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGaa               >  1:70460/1‑150 (MQ=255)

                                                                                                                                           gCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGAcc         >  1:70941/1‑150 (MQ=255)

                                                                                                                                               aTTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAAt     >  1:70945/1‑150 (MQ=255)

                                                                                                                                                ttGCCAAAGTAACAAGATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATg    <  1:70564/150‑1 (MQ=255)

                                                                                                                                                 tGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGt   >  1:70949/1‑150 (MQ=255)

                                                                                                                                                  gCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTa  <  1:70859/150‑1 (MQ=255)

AACGCTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTA  >  CP002416/3474901‑3475196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.