Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0024162,884,3560CA32.1% 146.2 / 19.4 81S30* (TCA→TAA) Clo1313_2469Prephenate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base C (31/24);  new base A (0/26);  total (31/50)
Fisher's exact test for biased strand distribution p-value = 1.95e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.38e-01
Rejected as consensus: Frequency below/above cutoff threshold.

TCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAAGAGAGTTTCA‑CTATGCAGGTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGGCGGGTCGCTGGCGAAAGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGATGCTGTTGAGTATA  >  CP002416/2884208‑2884505
                                                                                                                                                          |                                                                                                                                                     
tCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAAGAGAGTTTCA‑CTATGCAGGTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGGCGGGTCGCTGGCGAAAGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCa                                                                                                                                                      <  1:3182652/150‑1 (MQ=255)
 cTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAAGAGAGTTTCA‑CTATGCAGGTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGGCGGGTCGCTGGCGAAAGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCaa                                                                                                                                                     <  1:3181989/150‑1 (MQ=255)
    tgAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAAGAGAGTTTCA‑CTATGCAGGTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGGCGGGTCGCTGGCGAAAGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATaa                                                                                                                                                  <  1:3182654/150‑1 (MQ=255)
     gAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAAGAGAGTTTCA‑CTATGCAGGTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGGCGGGTCGCTGGCGAAAGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAAc                                                                                                                                                 <  1:3181985/150‑1 (MQ=255)
     gAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAAGAGAGTTTCA‑CTATGCAGGTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGGCGGGTCGCTGGCGAAAGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAAc                                                                                                                                                 <  1:3181987/150‑1 (MQ=255)
      aaCTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAAGAGAGTTTCA‑CTATGCAGGTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGGCGGGTCGCTGGCGAAAGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAAcc                                                                                                                                                <  1:3181983/150‑1 (MQ=255)
       aCTGTATAAAGATATAAGTAAAATTGCCGAAATATTAGGAAGAGAGTTTCA‑CTATGCAGGTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGGCGGGTCGCTGGCGAAAGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAAccg                                                                                                                                               <  1:3181981/150‑1 (MQ=255)
          gtgtAAAGATATAAGTAAAATTGCCAAAATATTAGGAAGAGAGTTTCA‑CTATGCAGGTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGGCGGGTCGCTGGCGAAAGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAAccgccg                                                                                                                                            <  1:3182600/150‑1 (MQ=255)
                 gATAAAAGTAAAATTGCCAAAATATTAGGAAGAGATTTTCA‑CTAGGGGGGTT‑GAAAAGATATCTATTAGCGGGTTGGGACTTAGCGGCGGGTCGCGGGCGAAATTTTTAAAAGAAAA‑G‑CTGGG‑CA‑TTGAGTCAATAACCGCCGTTGACAt                                                                                                                                     <  1:3182978/150‑1 (MQ=255)
                        gaaaattggcaaaaaTATTAGGAAGAG‑GTTTCAACGATG‑AGGTTTAAAAAAATCTCCATTAGCGGGGTGGGACTTATCGGCGGGTGGTTGGCGAAAGCTTGGAAA‑AAAA‑G‑GTTGG‑GAGTTGATTCAATAACCGCCGTTGACATCAATgag                                                                                                                              <  1:5380855/138‑1 (MQ=255)
                           aaaTTGCCGAAATATTAGGAAGAGAGTTTCA‑CTATGCAGGTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGGCGGATTGCCCGCGAAAGCTTTTTGAGAAAA‑A‑ACTGG‑CA‑TTGAGTtaataaa                                                                                                                                                 >  1:3182144/1‑127 (MQ=255)
                                    aaaTATTAGGAAGAGAGTTTCA‑CTATGCAGGTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGTCGGGTCGTTGGCCAAAGCCTTTTAAGAAAA‑A‑ATTTG‑CC‑TTGAGTCCATAAcagcc                                                                                                                                             >  1:3183011/1‑123 (MQ=255)
                                      atatTAGGAAGAGAGTTTCA‑CTAGGAGGGTT‑AAAAAGATATCAATTACGGGGCTTGGATTTAGCGGCGGGTCGCGGGCAAAGGCTTGAAAAGAAAA‑G‑TTTGG‑TT‑TTGAGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCa                                                                                                                <  1:3183015/150‑1 (MQ=255)
                                             gAAGAGAGTTTCA‑CTATGCAGGTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGGCGGGTCGCTGGCGAAAGCATTTAAAGAAAA‑A‑CTTTG‑GA‑TTTAGTCAATaa                                                                                                                                                  >  1:3182057/1‑109 (MQ=255)
                                              aaGAGAGTTTCA‑CTATGCAGGTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGGCGGGTGGCTGGCGGAAGCTTTGTAAGAAAA‑AACTTG‑‑CG‑TTGAGTCAATaa                                                                                                                                                  >  1:3182059/1‑108 (MQ=255)
                                                           cTATGCAGGTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGGCGGGGCGCTGGCGGAAACTTTGTAAAAAAA‑A‑CTTGG‑CA‑TTGAGTCAATaa                                                                                                                                                  >  1:3182249/1‑96 (MQ=255)
                                                                  ggTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGGCGGGTCGCTGGCGGAAGCTTTGAAAGAAAA‑A‑CTTGG‑CC‑TTTAGGCAATAACCCCCCCTTACATCCATGAGAAAAGACTGAGCCAGGCGCTTTAAGAGGGGTTTTTAAaaga                                                                                     >  1:3182063/1‑150 (MQ=255)
                                                                        aaaaaaTATCCATTAGGGGGTTTGGACTTATGGGGGGGTCGCGGGCGAAAG‑TTTGAAAAAAAAAG‑TTTGG‑CA‑TTGAGTAAATAACCGCCGTTGACATCAAt                                                                                                                                 <  1:3182644/101‑1 (MQ=255)
                                                                        aaaaGATATCCATTATGGGTCTTGGCCTTATCGGGGGGCCGCTGGCGAAAGCTTTAAAAAAAAA‑G‑CTTGG‑CT‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTaa                                                                                                       <  1:3183013/127‑1 (MQ=255)
                                                                        aaaaGATATCCATTATCGGGCTTGGTTTTAGGGGGGGGTCGGTGGCAAAAGTTTAAAAAGAAAG‑G‑CTTGG‑AA‑TTGAGTAAAAAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAaagaag                                                                                   <  1:3182197/147‑1 (MQ=255)
                                                                        aaaaGATACCCTTTATGGGGTTTGGACTTTGGGGCGGGTCGCGGGCGAAAGTTTAAAAAAAAAA‑G‑CTTGG‑CA‑TTGAGTAAATAACCGCCGTTGACATCAATg                                                                                                                                <  1:3182620/102‑1 (MQ=255)
                                                                        aaaaGATACCCATTATCGGGCTTGGACTTATCGGGGGGCCGCTGGCAAAAGTTTTAAAAAAAAA‑G‑TTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGtt                                                                                <  1:3182193/150‑1 (MQ=255)
                                                                        aaaaGATACCCATTAGGGGGTTTGGCCTTATGGGGGGGTCGCGGGCAAAAGTTTTAAAAAAAAA‑G‑CTGGG‑CA‑TTGAGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCa                                                                                                                <  1:3183017/118‑1 (MQ=255)
                                                                        aaaaGATACCCATTACGGGGTTTGGCCTTATCGGGGGGTCGCTGGCGAAAGTTTTAAAAAAAAA‑G‑TTTGG‑AA‑TTGAGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCt                                                                                                                      <  1:3183215/112‑1 (MQ=255)
                                                                         aaaGATATCCATTATCGGGCTTGGACTTATCGGCGGGGCGCCGGCGGAAGCTTTTAAAGAAAA‑A‑ATTGG‑GA‑TTGAGTCAATaaac                                                                                                                                                >  1:3182251/1‑83 (MQ=255)
                                                                               atCCATTATCGGGCTTGGACTTATCGGCGGGGCGCTGGGGAAAGCTTTTAAAGAAAA‑A‑ATTGG‑GA‑TTGAGTCAATAAacgcc                                                                                                                                             >  1:3182253/1‑82 (MQ=255)
                                                                                  cATTATCGGGCTTGGACTTATCGGCGGGGCGCTGGCGAAAGCTTTGAAAAAAAA‑A‑CTTGG‑CA‑TTGAGTCAATAAACGCCGGTGGCATCAATAAGAAAAAACTGAGCCAGGCTCTTTAAGAGGGGTTTATAAaagaa                                                                                    >  1:3182201/1‑136 (MQ=255)
                                                                                   aTTATCGGGCTTGGACTTATCGGCGGGTCGCGGGCGAAAGCGTTTAAAGAAAA‑A‑CTTGG‑CG‑TTGAGTCAATaaac                                                                                                                                                >  1:3183225/1‑73 (MQ=255)
                                                                                         gggCTGGGACTTATGGGGGGGTCGCTGGCAAAAGTTTTAAAAAAAAA‑G‑CTTGG‑CT‑TTGAGAAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGt                                                                                 <  1:3182195/132‑1 (MQ=255)
                                                                                                      tCGGCGGGGCGCTGGCGAAAGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGGTTTATAAGAGAAGGTTTTACCGAACTTAACGAATCGGTATATAAtt                                                  >  1:3181494/1‑150 (MQ=255)
                                                                                                       cggcggGTCGCTGGCGAAAGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGGATATAATTc                                                 >  1:3181954/1‑150 (MQ=255)
                                                                                                       cggcggGTCGCTGGCGAAAGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGGTTTACCGAACTTAACGAATCGGTATATAATTc                                                 >  1:3182065/1‑150 (MQ=255)
                                                                                                        ggggggTCGCGGGAGAAAG‑TTTAAAAAAAAA‑G‑GTTGGGCT‑TTGAGCCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCt                                                <  1:3182396/147‑1 (MQ=255)
                                                                                                          cggGTCGCTGGCGAAAGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGa                                              >  1:3182069/1‑150 (MQ=255)
                                                                                                          cggGTCGCTGGCGAAAGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGa                                              >  1:3182067/1‑150 (MQ=255)
                                                                                                                gCTGGCAAAAG‑TTTGAAAAAAAAAG‑TTTGG‑CA‑TTGAGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGtttt                                                                                             <  1:3182354/97‑1 (MQ=255)
                                                                                                                   ggggAAAGGTTTTAAAAAAAA‑GGCTTGG‑CT‑TTGATTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCt                                                <  1:3182030/137‑1 (MQ=255)
                                                                                                                   ggcaaatgtttagaaagaaaA‑G‑CTTGG‑TA‑TTGAGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCt                                                <  1:3182171/127‑1 (MQ=255)
                                                                                                                   ggcaaaaGCTTTAAAAAAAAA‑G‑CTTGG‑CT‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAAc                                                                       <  1:3182189/112‑1 (MQ=255)
                                                                                                                   ggaaaaggtttagaaaaaaaG‑G‑CTTGG‑CT‑TGGAGTCAAGAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATaa                                                    <  1:3183213/123‑1 (MQ=255)
                                                                                                                   ggCGAAAGTTTGGAAAAAAAA‑G‑CTGGG‑CA‑TGGAGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCg                                                            <  1:3182183/127‑1 (MQ=255)
                                                                                                                   ggCGAAAGTTTAAAAAAAAAA‑G‑CTTGG‑CT‑TTGAGACAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGt                                                                                                <  1:3182384/91‑1 (MQ=255)
                                                                                                                    gggAAAGTTTGGAAAAAAAA‑G‑CTTGG‑AA‑TGGGGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGt                                                                                                <  1:3182026/88‑1 (MQ=255)
                                                                                                                       aaggtttaaaaagaaaA‑G‑TTGGG‑CA‑TTGAGTCAAAAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCata                                 <  1:3182161/141‑1 (MQ=255)
                                                                                                                       aaggcttaaaaagaaaA‑G‑CTTGG‑CT‑TTGAGTCAAAAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACattatt                                       <  1:3182372/135‑1 (MQ=255)
                                                                                                                       aaagtttaaaaaaaaaa‑G‑CTTGG‑CA‑TTGATTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACa                                            <  1:3182167/126‑1 (MQ=255)
                                                                                                                       aaaGTTTTGAAAAAAAA‑G‑CTTGG‑CA‑TTGAGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGaa                                                               <  1:3182187/120‑1 (MQ=255)
                                                                                                                       aaaGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCata                                 >  1:3181838/1‑150 (MQ=255)
                                                                                                                       aaaGCTTTAAAAGAAAA‑G‑CTTGG‑CA‑TGGAGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGtt                                                                                               <  1:3182400/88‑1 (MQ=255)
                                                                                                                        aaagtttGAAAAAAAA‑GGCTGGG‑CA‑TGGGGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACg                                                                 <  1:3182362/114‑1 (MQ=255)
                                                                                                                        aaGCTTTAAAAGAAAA‑G‑TTTGG‑AA‑TTGATTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCatat                                <  1:3182157/150‑1 (MQ=255)
                                                                                                                          gCTTTGAAAAAAAA‑G‑CTGGG‑CA‑TTGAGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGt                              <  1:3182153/150‑1 (MQ=255)
                                                                                                                           cTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTa                             >  1:3181946/1‑150 (MQ=255)
                                                                                                                           cTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTa                             >  1:3182071/1‑150 (MQ=255)
                                                                                                                             ttGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTaca                           >  1:3182073/1‑150 (MQ=255)
                                                                                                                                aaagaaaA‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCg                        >  1:3181500/1‑150 (MQ=255)
                                                                                                                                aaagaaaA‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCg                        >  1:3182075/1‑150 (MQ=255)
                                                                                                                                aaaaaaaa‑G‑CTTGG‑CT‑TTGAGTAAAAAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTc                                    <  1:3182632/134‑1 (MQ=255)
                                                                                                                                   gaaaA‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGtt                     >  1:3181768/1‑150 (MQ=255)
                                                                                                                                   gaaaA‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGtt                     >  1:3181802/1‑150 (MQ=255)
                                                                                                                                   aaaaa‑G‑CTTGG‑CT‑TTGATTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGtt                     <  1:3182151/149‑1 (MQ=255)
                                                                                                                                    aaaa‑G‑TTTGG‑CA‑TTAAATCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTa                    <  1:3182240/150‑1 (MQ=255)
                                                                                                                                     aaa‑G‑CTGGG‑CA‑TTGAGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTaa                   <  1:3182147/150‑1 (MQ=255)
                                                                                                                                      aaaggctggg‑CA‑TTGAGTAAAAAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTa                    <  1:3182149/142‑1 (MQ=255)
                                                                                                                                      aaaatgttGG‑CA‑TTGAAAAAATAGCCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCata                                 <  1:3182159/131‑1 (MQ=255)
                                                                                                                                      aa‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAg                  >  1:3181834/1‑150 (MQ=255)
                                                                                                                                       a‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAgg                 >  1:3182077/1‑150 (MQ=255)
                                                                                                                                          aagtttggatttGAGTCAAAAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAg                  <  1:3182145/140‑1 (MQ=255)
                                                                                                                                           cTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGAt               >  1:3181764/1‑150 (MQ=255)
                                                                                                                                           cTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGAt               >  1:3182079/1‑150 (MQ=255)
                                                                                                                                             ttgtaa‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGAt               <  1:3182139/144‑1 (MQ=255)
                                                                                                                                             tGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGATGc             >  1:3181776/1‑150 (MQ=255)
                                                                                                                                              ttggatttGAGTAAAAAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGAt               <  1:3182141/143‑1 (MQ=255)
                                                                                                                                              tggtcattgatacAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAg                  <  1:3182616/134‑1 (MQ=255)
                                                                                                                                              gg‑CA‑TTGATTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGATGCt            <  1:3182135/150‑1 (MQ=255)
                                                                                                                                               g‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGATGCTg           >  1:3182085/1‑150 (MQ=255)
                                                                                                                                               g‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGATGCTg           >  1:3182083/1‑150 (MQ=255)
                                                                                                                                               g‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGATGCTg           >  1:3182081/1‑150 (MQ=255)
                                                                                                                                                gtcttggattCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGATGCt            <  1:3182446/141‑1 (MQ=255)
                                                                                                                                                gcctttGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGAt               <  1:3182056/143‑1 (MQ=255)
                                                                                                                                                 gatgtGAGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGATGCTg           <  1:3182036/146‑1 (MQ=255)
                                                                                                                                                       aGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGATGCTGTTGAGt     <  1:3182648/150‑1 (MQ=255)
                                                                                                                                                        gTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGATGCTGTTGAGta    >  1:3182087/1‑150 (MQ=255)
                                                                                                                                                          cAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGATGCTGTTGAGtata  >  1:3182089/1‑150 (MQ=255)
                                                                                                                                                          cAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGATGCTGTTGAGtata  >  1:3182091/1‑150 (MQ=255)
                                                                                                                                                          |                                                                                                                                                     
TCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAAGAGAGTTTCA‑CTATGCAGGTT‑GAAAAGATATCCATTATCGGGCTTGGACTTATCGGCGGGTCGCTGGCGAAAGCTTTGAAAGAAAA‑G‑CTTGG‑CA‑TTGAGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGGTTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGTACACCGGTTAAGGATGCTGTTGAGTATA  >  CP002416/2884208‑2884505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑