Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP002416	1,820,227	0	G	T	27.6%	121.1 / 13.5	58	V23F (GTT→TTT)	Clo1313_1561	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (12/30);  new base T (16/0);  total (28/30)
Fisher's exact test for biased strand distribution p-value = 3.80e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

ACAAGCTTAACAAAGGTCTTTTCCGTACAAATCTCCCTTGAAAATTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAATCATATAATCTGGGTGATATTGTTGAG  >  CP002416/1820078‑1820376                                                                                                                                                      |                                                                                                                                                         aCAAGCTTAACAAAGGTCTTTTCCGTACAAATCTCCCTTGAAAATTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTg                                                                                                                                                          <  1:196718/150‑1 (MQ=255)            aaaGGTCTTTTCCGTACAAATCTCCCTTGAAAATTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAAt                                                                                                                                             <  1:1304144/150‑1 (MQ=255)              aGGTCTTTTCCGTACAAATCTCCCTTGAAAATTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑c                                                                                                                                          <  1:631669/150‑1 (MQ=255)                gTCTTTTCCGTACAAATCTCCCTTGAAAATTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAg                                                                                                                                        <  1:1758804/150‑1 (MQ=255)                gTCTTTTCCGTACAAATCTCCCTTGAAAATTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAg                                                                                                                                        <  1:886116/150‑1 (MQ=255)                 tCTTTTCCGTACAAATCTCCCTTGAAAATTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAgg                                                                                                                                       <  1:320846/150‑1 (MQ=255)                    tttCCGTACAAATCTCCCTTGAAAATTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGaaa                                                                                                                                    <  1:426192/150‑1 (MQ=255)                    tttCCGTACAAATCTCCCTTGAAAATTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGaaa                                                                                                                                    <  1:426170/150‑1 (MQ=255)                           aCAAATCTCCCTTGAAAATTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTTTT‑TCTC‑AAAATG‑TAGGgaaa                                                                                                                                   >  1:1111076/1‑144 (MQ=255)                            cAAATCTCCCTTGAAAATTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAg                                                                                                                            <  1:153372/150‑1 (MQ=255)                                 ctcCCTTGAAAATTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTTTT‑CCTC‑AAAATG‑CAGGAAAAGATACa                                                                                                                             >  1:1373557/1‑144 (MQ=255)                                      ttGAAAATTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTTTCCCC‑AAAA‑G‑CAGGAAAAGaaaaa                                                                                                                             >  1:474548/1‑135 (MQ=255)                                       tGAAAATTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGGT‑CCTCCAAAAGG‑AAGGaaaaat                                                                                                                                 >  1:2137793/1‑133 (MQ=255)                                           aaTTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑TCTC‑AAAAAG‑CAGGgaaa                                                                                                                                   >  1:365596/1‑128 (MQ=255)                                            aTTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCAc                                                                                                            <  1:726569/150‑1 (MQ=255)                                             ttATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTTTT‑TCTC‑AAAATG‑CAGGAAAAGa                                                                                                                                 >  1:953911/1‑128 (MQ=255)                                             ttATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCAcc                                                                                                           <  1:536132/150‑1 (MQ=255)                                                tatatTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTTTT‑TCTC‑CAAATG‑CAGGgaaa                                                                                                                                   >  1:1311431/1‑123 (MQ=255)                                                tatatTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGATTTGTT‑CCCC‑aa                                                                                                                                                >  1:20443/1‑111 (MQ=255)                                                   atTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAAAG‑CAGGGAAAGATACa                                                                                                                             >  1:671053/1‑126 (MQ=255)                                                        aaaCCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑TCTC‑AAAAAG‑CAGGAAAAGATACa                                                                                                                             >  1:1743129/1‑121 (MQ=255)                                                           ccAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTTTT‑TCTC‑AAAAAG‑CAGGgaaaaa                                                                                                                                 >  1:342371/1‑112 (MQ=255)                                                             aaaaGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTTTT‑TCTC‑CAAAAG‑CAGGaaaa                                                                                                                                   >  1:1677536/1‑110 (MQ=255)                                                              aaaGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTTTT‑TCTCCAAAAT‑‑CAGGaaaa                                                                                                                                   >  1:1180688/1‑109 (MQ=255)                                                              aaaGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGa                                                                                          <  1:1719005/150‑1 (MQ=255)                                                                        aGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTTTT‑TCTC‑AAAATG‑CAGGAAAAAATACAGCCCTGcc                                                                                                                     >  1:501079/1‑113 (MQ=255)                                                                           aGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCaaaa                                                                             <  1:1726588/150‑1 (MQ=255)                                                                             tGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAAc                                                                           <  1:121589/150‑1 (MQ=255)                                                                                   cATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑TCCC‑AAAATG‑GAGGAAAAAATAAAACACTGCCaa                                                                                                                   >  1:1946437/1‑104 (MQ=255)                                                                                     tGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGCTTTTTT‑TCTC‑CAAAAG‑CAGGGAAAAATa                                                                                                                               >  1:334261/1‑90 (MQ=255)                                                                                        aaaaGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGCTTTGGT‑cc                                                                                                                                                     >  1:2017354/1‑67 (MQ=255)                                                                                         aaaGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTTTT‑TCCC‑CAAATG‑CAAGAAAAGATaaa                                                                                                                             >  1:1312232/1‑86 (MQ=255)                                                                                         aaaGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCAt                                                               <  1:448558/150‑1 (MQ=255)                                                                                            gTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGAc                                                            <  1:19730/150‑1 (MQ=255)                                                                                                gcagcaTTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCct                                                        <  1:438308/150‑1 (MQ=255)                                                                                                gcagcaTTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCct                                                        <  1:1660861/150‑1 (MQ=255)                                                                                                    caTTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTTTT‑TCTC‑CAAATGTCGGGAAAA‑AAAAAGCACTGCCaaac                                                                                                                 >  1:1184270/1‑87 (MQ=255)                                                                                                      ttGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGtt                                                  <  1:256921/150‑1 (MQ=255)                                                                                                       tGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGttt                                                 <  1:21270/150‑1 (MQ=255)                                                                                                        gCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTc                                                <  1:883715/150‑1 (MQ=255)                                                                                                           gATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTTTT‑TCCC‑AAAAAG‑CACGAAAAGATACAGc                                                                                                                           >  1:1966763/1‑72 (MQ=255)                                                                                                              ttttACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCggagga                                          <  1:1700400/150‑1 (MQ=255)                                                                                                               tttACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGaa                                         <  1:376183/150‑1 (MQ=255)                                                                                                                      tCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAAAAACAACACTGCCAACCGGCACCGGGGTCAATAAAACTGATACAGCAGCAAAAAAAACTGAGccc                                                                 >  1:703409/1‑119 (MQ=255)                                                                                                                       cGTTTTTCTGCTTGTCGGATGCGGCGGTTTTTTT‑CCTC‑AAAAAG‑CAGGGAAAAATAAAGCACTGCCCACCCGCACCCGTGTCAAAAAACCTGATACAACAGCaaaaa                                                                            >  1:905373/1‑107 (MQ=255)                                                                                                                           tttCTGCTTGTCGGATGCGGCGGTTTTTTT‑TCTC‑AAAAAG‑CAGGAAAAAATACAACACTGCCCACCCGCACCCGGGTCAATAAAACTGATACAACAGCAAAAAAAGCTGAGCCCATTACTCCTGCTGTTTCGGGGGGAAGCAGGATaaaa                             >  1:1181439/1‑150 (MQ=255)                                                                                                                            ttCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAAt                            <  1:987878/150‑1 (MQ=255)                                                                                                                                gCTTGTCGGATGCGGCGGTTTTTTT‑TCTC‑CAAAAG‑CCGGTAAAAAAACAGCACTGCCCAcc                                                                                                                 >  1:1634218/1‑61 (MQ=255)                                                                                                                                 cTTGTCGGATGCGGCGGTTTTTTT‑CTTC‑CAAATG‑CTTGAAAAGATTCATCACTGccca                                                                                                                   >  1:394579/1‑56 (MQ=255)                                                                                                                                 cTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAATCatat                       <  1:2154205/150‑1 (MQ=255)                                                                                                                                  ttGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAATCAtata                      <  1:498406/150‑1 (MQ=255)                                                                                                                                   tGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAATCATATaa                     <  1:1807981/150‑1 (MQ=255)                                                                                                                                                ggTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAATCATATAATCTGGGTGATAtt        <  1:669053/150‑1 (MQ=255)                                                                                                                                                ggTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAATCATATAATCTGGGTGATAtt        >  1:1445173/1‑150 (MQ=255)                                                                                                                                                  ttttGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCTGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAATAGCTGAGTCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAACCATATAATCTGGGTGATAgtgt      >  1:2092074/1‑150 (MQ=255)                                                                                                                                                  ttttGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAATCATATAATCTGGGTGATAttgt      <  1:21201/150‑1 (MQ=255)                                                                                                                                                    ttGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAATCATATAATCTGGGTGATAttgttg    <  1:2215622/150‑1 (MQ=255)                                                                                                                                                    ttGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAATCATATAATCTGGGTGATAttgttg    >  1:228170/1‑150 (MQ=255)                                                                                                                                                     tGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAATCATATAATCTGGGTGATATTGTTGa   <  1:334026/150‑1 (MQ=255)                                                                                                                                                      gTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAATCATATAATCTGGGTGATATTGTTGAg  <  1:2037327/150‑1 (MQ=255)                                                                                                                                                      gTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAATCATATAATCTGGGTGATATTGTTGAg  >  1:1312155/1‑150 (MQ=255)                                                                                                                                                      gTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAATCATATAATCTGGGTGATATTGTTGAg  <  1:1311432/150‑1 (MQ=255)                                                                                                                                                      gTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAATCATATAATCTGGGTGATATTGTTGAg  <  1:339007/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                         ACAAGCTTAACAAAGGTCTTTTCCGTACAAATCTCCCTTGAAAATTATATATTTAAAACCAAAAGTAAACCAGGAGTGGTAACATGAAAAAGTTTGCAGCATTGCTGATTTTTACGGTCGTTTTTCTGCTTGTCGGATGCGGCGGTTTTGTT‑CCTC‑AAAATG‑CAGGAAAAGATACAGCACTGCCAACCGGCACCGGTGTCAATAAACCTGATACAGCAGCAAAAACAGCTGAGCCCATGACTCCTGCTGTTTCGGAGGAAAGCAGGATAAAATCATATAATCTGGGTGATATTGTTGAG  >  CP002416/1820078‑1820376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑