Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0024163,391,8130AC30.6% 191.2 / 30.5 100V25G (GTA→GGA) Clo1313_28823‑isopropylmalate dehydrogenase
Reads supporting (aligned to +/- strand):  ref base A (56/12);  new base C (0/30);  total (56/44)
Fisher's exact test for biased strand distribution p-value = 7.72e-16
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 102 total aligned reads displayed.

GGCCCCCAGCAAAACTGCATCAGAGGACTTGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTCGGAAGCAATTATTTCCTGCATAAA  >  CP002416/3391665‑3391962
                                                                                                                                                       |                                                                                                                                                      
ggCCCCCAGCAAAACTGCATCAGAGGACTTGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTAc                                                                                                                                                       >  1:1714020/1‑150 (MQ=255)
ggCCCCCAGCAAAACTGCATCAGAGGACTTGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTAc                                                                                                                                                       >  1:2466057/1‑150 (MQ=255)
ggCCCCCAGCAAAACTGCATCAGAGGACTTGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTAc                                                                                                                                                       >  1:2364993/1‑150 (MQ=255)
ggCCCCCAGCAAAACCGCATCAGAGGACTTGCAGAGTTCCAGTGCCTCTCTTGGGAAGGGCTCGCCGGGGTCATCAATGGCACATCCACCGAGCAGGCCCCCTCTTAATTCAAGAC‑TGTG‑TTTGTAAATCTCACCCACAGCTTCCA‑TTAc                                                                                                                                                       >  1:1699640/1‑150 (MQ=255)
   ccccAGCAAAACTGCATCAGAGGACTTGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTTACCCACAGCTTCAA‑TTACC‑tt                                                                                                                                                   <  1:258446/150‑1 (MQ=255)
    cccAGCAAAACTGCATCAGAGGACTTGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTa                                                                                                                                                  >  1:1049152/1‑150 (MQ=255)
    cccAGCAAAACTGCATCAGAGGACTTGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTa                                                                                                                                                  <  1:2308343/150‑1 (MQ=255)
        gCAAAACTGCATCAGAGGACTTGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCg                                                                                                                                              <  1:2546756/150‑1 (MQ=255)
          aaaaCTGCATCAGAGGACTTGCAGAGTTCCAGCTTCTCTTTTGGGAAGGGCTCGCCGGTGGAATCAATGGCTCATCCACCGAGCGGGCCTTCTTTTAATTCAAAAC‑TGGG‑ATTGTATATCCCACCCAAAGCTTCAA‑TTACC‑TTAACCGcc                                                                                                                                            >  1:708092/1‑150 (MQ=255)
            aaCTGCATCAGAGGACTTGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTg                                                                                                                                          >  1:166373/1‑150 (MQ=255)
               tGCATCAGAGGACTTGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTc                                                                                                                                       >  1:1855994/1‑150 (MQ=255)
                gCATCAGAGGACTTGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCa                                                                                                                                      >  1:491604/1‑150 (MQ=255)
                    cAGAGGACTTGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATaa                                                                                                                                  >  1:85000/1‑150 (MQ=255)
                      gagGACTTGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACt                                                                                                                                >  1:1075241/1‑150 (MQ=255)
                       agGACTTGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACtt                                                                                                                               >  1:609336/1‑150 (MQ=255)
                             tGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGcc                                                                                                                         >  1:71372/1‑150 (MQ=255)
                               cAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCt                                                                                                                       >  1:2693311/1‑150 (MQ=255)
                                   gTTCCAGCGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCCATAc                                                                                                                   >  1:1425012/1‑150 (MQ=255)
                                       cAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTc                                                                                                               >  1:2272246/1‑150 (MQ=255)
                                       cAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTc                                                                                                               >  1:626392/1‑150 (MQ=255)
                                         gtgtCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCAc                                                                                                             >  1:1833533/1‑150 (MQ=255)
                                             ctctTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCgg                                                                                                         >  1:682833/1‑150 (MQ=255)
                                               ctTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGaa                                                                                                       >  1:1867784/1‑150 (MQ=255)
                                                tttggggAAGGGCTCGCCGGTGGCATCAATGGCACACCCCCCGAGCAGGCCTTTTTTTAATTCAAAAC‑TGTG‑ATTTTATATCTCCCCCACAGCTTCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAg                                                                                                      <  1:2410102/146‑1 (MQ=255)
                                                 tttGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGt                                                                                                     >  1:2719864/1‑150 (MQ=255)
                                                    gggAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTAcc                                                                                                  >  1:1919908/1‑150 (MQ=255)
                                                      gAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGc                                                                                                >  1:1519758/1‑150 (MQ=255)
                                                       aaGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCt                                                                                               >  1:2186056/1‑150 (MQ=255)
                                                           gCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTAttt                                                                                           >  1:1121705/1‑150 (MQ=255)
                                                             tCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTta                                                                                         >  1:2550817/1‑150 (MQ=255)
                                                                  ggTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGATCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTtataatt                                                                                    >  1:2608035/1‑147 (MQ=255)
                                                                   ggggCATCAAGGGCACATCCCCCGAGCGGCCCTTTTTTTAATAAAAAAC‑TGTG‑ATTGTATATCTCCCCCACAGCTACAA‑TTACT‑TTAACCGCCTGTTCAATAACt                                                                                                                                <  1:2401009/103‑1 (MQ=255)
                                                                   gTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACttt                                                                                   >  1:147407/1‑150 (MQ=255)
                                                                      gCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTccc                                                                                >  1:34419/1‑150 (MQ=255)
                                                                               gCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGc                                                                       >  1:818437/1‑150 (MQ=255)
                                                                                    tCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGcctcct                                                                  >  1:1755702/1‑150 (MQ=255)
                                                                                     cccccGAGCAGGCTTTTTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCCCCCACAGCTTCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCtata                                                                                                                    <  1:1454629/96‑1 (MQ=255)
                                                                                     cccccGAGCAGGCTTTTTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCCCCCACACCTTCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCg                                                                                                          <  1:532868/106‑1 (MQ=255)
                                                                                     cccccGAGCAGGCCTTTTTTTAATTCAAAAC‑TGTT‑ATTGTATTTCTCCCCCCCACCTTCAT‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTtata                                                                                       <  1:639839/125‑1 (MQ=255)
                                                                                     cccccGAGCAGGCCTTCTTTTAAT‑AAAAAC‑TGGGGATTTTATATCTCCCCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTAc                                                                                                   <  1:2687277/113‑1 (MQ=255)
                                                                                      cACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTg                                                                >  1:1422966/1‑150 (MQ=255)
                                                                                        ccGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTTTATACCTCCCCCACAGCTTCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGtt                                                                           <  1:259466/137‑1 (MQ=255)
                                                                                           aGCAGGCTTTTTTTTAATTAAAAAT‑TGGG‑ATTGTATATCTCCCCCACCGCTTAAT‑TTTCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTcc                                                                                 <  1:1789161/128‑1 (MQ=255)
                                                                                             cAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCaa                                                         >  1:153485/1‑150 (MQ=255)
                                                                                              aGGCCTTCTTTAAATTAAAAAC‑GGTG‑CTTTTATACCTCCCCCCCAGCTTAAA‑TTGCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTa                                                                                                    <  1:825916/106‑1 (MQ=255)
                                                                                               ggcttttttttAATTCAAAAC‑TGTG‑TTTGTATATCTCCCCCACAGCTTCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAg                                                                                                      <  1:1120968/96‑1 (MQ=255)
                                                                                                gCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCt                                                      >  1:2094944/1‑150 (MQ=255)
                                                                                                   tttttttAATTCAAACC‑TGTG‑ATTTTATATCTCCCCCACAGCTTCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCa                                                                               <  1:905966/119‑1 (MQ=255)
                                                                                                   tttttttAATTCAAAAC‑TGTG‑TTTGTATATCCCCCCCACAGCTTCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGc                                                                                                                          <  1:655384/76‑1 (MQ=255)
                                                                                                   tttttttAATTCAAAAC‑TGTG‑ATTGTATATCCCCCCCACAGCTTCAA‑TTCCC‑TAAACCGCCTGTTCAATAACTTCCGGCCCTATAc                                                                                                                   <  1:179471/83‑1 (MQ=255)
                                                                                                   tttttttAATTAAAAAC‑TGTG‑TTTGTATATCTCCCCCCCAGCTTAAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCtt                                                                 <  1:1384725/133‑1 (MQ=255)
                                                                                                   tttttttAATTAAAAAC‑TGTG‑ATTGTATATCTCCCCCACAGCTTCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGc                                                    <  1:84999/146‑1 (MQ=255)
                                                                                                    ttttttTATTCAAAACCTGTG‑ATTGTATTTCTCCCCCACAGCTT‑AA‑TTCCCCTTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCAccc                                                                                                           <  1:1245354/92‑1 (MQ=255)
                                                                                                     cttTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCttt                                                 >  1:338748/1‑150 (MQ=255)
                                                                                                      ttttAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGTCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGAACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCtttt                                                >  1:2668959/1‑150 (MQ=255)
                                                                                                      ttttAATTAAAATC‑TTTG‑TTTCTATATCCCACCCACGCCTTAAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCtttt                                                <  1:2245843/150‑1 (MQ=255)
                                                                                                      ttttAATTAAAACC‑TGTT‑ATTTTATATCCCCCCCACAGCTTCAT‑TTACC‑TTAACCGCCTGTTCAATAACTTc                                                                                                                              <  1:1931361/72‑1 (MQ=255)
                                                                                                        ttAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTa                                              >  1:1381659/1‑150 (MQ=255)
                                                                                                          aaTTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAat                                            >  1:860033/1‑150 (MQ=255)
                                                                                                              cAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAatatat                                        >  1:771425/1‑150 (MQ=255)
                                                                                                               aaaaC‑TGTG‑ATTGTTTGTCTCCCCCACATCTTCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAatat                                          <  1:937625/147‑1 (MQ=255)
                                                                                                               aaaaC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAatat                                          <  1:2057081/147‑1 (MQ=255)
                                                                                                                aaaC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATcc                                      >  1:2660026/1‑150 (MQ=255)
                                                                                                                    ctgcg‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCg                                     >  1:707859/5‑148 (MQ=255)
                                                                                                                          aTTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTc                              >  1:207053/1‑150 (MQ=255)
                                                                                                                          aTTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTc                              >  1:1453957/1‑150 (MQ=255)
                                                                                                                              tataTCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTc                          >  1:800021/1‑150 (MQ=255)
                                                                                                                              tataTCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTc                          >  1:2224089/1‑150 (MQ=255)
                                                                                                                              tataTCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTc                          >  1:1861091/1‑150 (MQ=255)
                                                                                                                                tatCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTCgg                        >  1:2603289/1‑150 (MQ=255)
                                                                                                                                     cccccACAGCTTCAT‑TTCCC‑TAAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCttt                                                 <  1:1024391/118‑1 (MQ=255)
                                                                                                                                     cccccACAGCTTCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATg                                                                             <  1:366859/90‑1 (MQ=255)
                                                                                                                                     cccccACAG‑TTCAAGTTCCC‑TTATCCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCa                                                          <  1:1255094/109‑1 (MQ=255)
                                                                                                                                     cACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTCGGAAGCa                   >  1:2074283/1‑150 (MQ=255)
                                                                                                                                      aCCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTCGGAAGCaa                  >  1:2441586/1‑150 (MQ=255)
                                                                                                                                       cccccagtttCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGc                                                                       <  1:1578342/88‑1 (MQ=255)
                                                                                                                                       cccccaGCTTCAA‑TTCCC‑TAAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCttt                                                 <  1:2364994/114‑1 (MQ=255)
                                                                                                                                       cccACAGCTTCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGa                                    <  1:2540930/131‑1 (MQ=255)
                                                                                                                                       cccACAGCTTCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTc                              <  1:1704746/137‑1 (MQ=255)
                                                                                                                                       cccACAGCTTCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGt                           <  1:1928775/140‑1 (MQ=255)
                                                                                                                                       cccACAGCTTCAA‑TTCCC‑TAAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTc                                                                                  <  1:478042/85‑1 (MQ=255)
                                                                                                                                       cccACACCTTAAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAAt                                                        <  1:1092554/111‑1 (MQ=255)
                                                                                                                                        ccACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTCGGAAGCAatt                >  1:2533305/1‑150 (MQ=255)
                                                                                                                                         cccaGCTTCAA‑TTCCC‑TCAGCCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGt                               <  1:844879/132‑1 (MQ=255)
                                                                                                                                           caGCTTCAA‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATaa                                 <  1:858777/130‑1 (MQ=255)
                                                                                                                                           caGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTCGGAAGCAattatt             >  1:959387/1‑150 (MQ=255)
                                                                                                                                              cttaaa‑TTCCC‑TTACCCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATcc                                      <  1:1040258/118‑1 (MQ=255)
                                                                                                                                               ttaaa‑TTCCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGt                           <  1:105612/129‑1 (MQ=255)
                                                                                                                                               ttaaa‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTAt                                                                         <  1:2563760/83‑1 (MQ=255)
                                                                                                                                               ttCAA‑TTCCC‑TAAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATg                                                                        <  1:2352977/87‑1 (MQ=255)
                                                                                                                                               ttCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTCGGAAGCAATTATTTCCt         >  1:886846/1‑150 (MQ=255)
                                                                                                                                               ttCAA‑TTACC‑TAAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGa                                    <  1:1833534/123‑1 (MQ=255)
                                                                                                                                                ttaatttACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTa                                                                                                    <  1:1623995/54‑1 (MQ=255)
                                                                                                                                                tCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTCGGAAGCAATTATTTCCTg        >  1:2446611/1‑150 (MQ=255)
                                                                                                                                                tCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTCGGAAGCAATTATTTCCTg        >  1:1426691/1‑150 (MQ=255)
                                                                                                                                                  aa‑TTCCC‑TTACCCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTCGGAAGCaa                  <  1:2742996/138‑1 (MQ=255)
                                                                                                                                                   aataaCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTCGGAAGCAat                 <  1:2452180/135‑1 (MQ=255)
                                                                                                                                                   a‑TTACC‑TAAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTCGGAAGCAATTATTTCCTGCAt     <  1:1422965/150‑1 (MQ=255)
                                                                                                                                                     ttACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTCGGAAGCAATTATTTCCTGCATa    >  1:437182/1‑150 (MQ=255)
                                                                                                                                                       aCC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTCGGAAGCAATTATTTCCTGCATaaa  >  1:59334/1‑150 (MQ=255)
                                                                                                                                                       |                                                                                                                                                      
GGCCCCCAGCAAAACTGCATCAGAGGACTTGCAGAGTTCCAGTGTCTCTTTTGGGAAGGGCTCGCCGGTGGCATCAATGGCACATCCACCGAGCAGGCCTTCTTTTAATTCAAAAC‑TGTG‑ATTGTATATCTCACCCACAGCTTCAA‑TTACC‑TTAACCGCCTGTTCAATAACTTCCGGCCCTATACCGTCACCCGGAAGTACCGCTATTTTATACTTTCCCATGTTATGCCTCCTTGTTTCCAATCTGCTTTTTAATATATCCGATAAGTCCGTCGGAAGCAATTATTTCCTGCATAAA  >  CP002416/3391665‑3391962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑