New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP002416 851321 =15 (0.110)139 (1.060) 115/296 0.1 61.9% coding (410/702 nt) Clo1313_0738 hypothetical protein
?CP002416 = 2790290 156 (1.190)intergenic (‑107/+74) Clo1313_2375/Clo1313_2376 Integrase catalytic region/Resolvase domain protein

Only 100 of 295 total aligned reads displayed.

TTTAAAATGTCTTTCCTTCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTCAACCACTATCCTGTCATCATATGCAATTGCTTTTTC  >  CP002416/2790142‑2790438
                                                                                                                                                    |                                                                                                                                                    
tttAAAATGTCTTTCCTTCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCa                                                                                                                                                     <  1:877208/150‑1 (MQ=255)
 ttAAAATGTCTTTCCTTCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCAt                                                                                                                                                    <  1:1992907/150‑1 (MQ=255)
   aaaaTGTCTTTCCTTCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATAc                                                                                                                                                  >  1:1003577/1‑150 (MQ=255)
     aaTGTCTTTCCTTCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaa                                                                                                                                                <  1:2284341‑M2/150‑7 (MQ=255)
     aaTGTCTTTCCTTCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaa                                                                                                                                                >  1:766677‑M2/1‑144 (MQ=255)
     aaTGTCTTTCCTTCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACaa                                                                                                                                                >  1:2238057/1‑150 (MQ=255)
      aTGTCTTTCCTTCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaa                                                                                                                                               <  1:1690795‑M2/150‑8 (MQ=255)
         tCTTTCCTTCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAGTGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagct                                                                                                                                            >  1:1912903‑M2/1‑140 (MQ=255)
           tttCCTTCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTATTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctct                                                                                                                                          >  1:692069‑M2/1‑138 (MQ=255)
            ttCCTTCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctcta                                                                                                                                         <  1:233021‑M2/150‑14 (MQ=255)
               cTTCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGCGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatga                                                                                                                                      <  1:1271019‑M2/150‑17 (MQ=255)
               cTTCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGTCAATTAATTTTACAACTTACCATACAATTATataaaa                                                                                                                                      <  1:2586794/150‑1 (MQ=255)
               cTTCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATataaaa                                                                                                                                      <  1:2205682/150‑1 (MQ=255)
                ttCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgat                                                                                                                                     <  1:48830‑M2/150‑18 (MQ=255)
                 tCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgata                                                                                                                                    <  1:2546146‑M2/150‑19 (MQ=255)
                  cGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATataaaataa                                                                                                                                   >  1:2508905/1‑150 (MQ=255)
                    tGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaa                                                                                                                                 <  1:3200649‑M2/150‑22 (MQ=255)
                      gTATTATTATGTTGACTCATTTCGGTTCCTCCAATGGTTTTTGTATGGTCTCTTAAAACATTATCAGAAATTCCGAAGTGAGTCGCTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACGTCCCATACAATTATataaaatg                                                                                                                                    <  1:1433128/145‑2 (MQ=255)
                       tattattatGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAAcgcc                                                                                                                              >  1:1882346/1‑150 (MQ=255)
                       tattattatGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAAcgcc                                                                                                                              <  1:2947789/150‑1 (MQ=255)
                       tattattatGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAAcgcc                                                                                                                              >  1:672013/1‑150 (MQ=255)
                            ttatGTTTACTCATTTCGGATCCTCCAATGTTTTTTGTATGGTCACTTAACACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCaa                                                                                                                         >  1:1347217/1‑150 (MQ=255)
                             tatGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggatt                                                                                                                        <  1:1425503‑M2/150‑31 (MQ=255)
                                 ttGACTCATTTCGGCTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCCATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTaag                                                                                                                    <  1:2424386/150‑1 (MQ=255)
                                   gACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttga                                                                                                                  >  1:2185054‑M2/1‑114 (MQ=255)
                                   gACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTaagaa                                                                                                                  >  1:2627177/1‑150 (MQ=255)
                                             ggTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCCCTCTTTTTTATTATGTTTGGGCAATTAATTTTACATCTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcaga                                                                                                         >  1:2293048‑M2/1‑104 (MQ=255)
                                                tcntccAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaata                                                                                                     <  1:1241594‑M2/150‑50 (MQ=255)
                                                tcctccAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCa                                                                                                     <  1:582613/150‑1 (MQ=255)
                                                   tccAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACt                                                                                                  >  1:1951512/1‑150 (MQ=255)
                                                    ccAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTg                                                                                                 >  1:3062948/1‑150 (MQ=255)
                                                     cAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattg                                                                                                <  1:1116852‑M2/150‑55 (MQ=255)
                                                       aTGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTggcg                                                                                              >  1:1638362/1‑150 (MQ=255)
                                                        tGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTggcgg                                                                                             >  1:2063215/1‑150 (MQ=255)
                                                         gTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTggcgg                                                                                             >  1:1675454/1‑149 (MQ=255)
                                                          ttttttGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCa                                                                                           <  1:951193/150‑1 (MQ=255)
                                                           tttttGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCaa                                                                                          <  1:2478343/150‑1 (MQ=255)
                                                             tttGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGATTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATc                                                                                        >  1:1280432/1‑150 (MQ=255)
                                                              ttGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagt                                                                                       >  1:846866‑M2/1‑87 (MQ=255)
                                                                 tATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtggg                                                                                    <  1:3162865‑M2/150‑67 (MQ=255)
                                                                 tATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtggg                                                                                    <  1:3026265‑M2/150‑67 (MQ=255)
                                                                 tATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCttat                                                                                    >  1:1619347/1‑150 (MQ=255)
                                                                  aTGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCttatt                                                                                   >  1:1215325/1‑150 (MQ=255)
                                                                   tGGTCACTTAAAACATTATCAGATATTCCGAAGTGAGTCACTCTTTTTTATTCTGTTTGGGCAATTAGTTTTACAACTTACCATACAATTATATAAAATAAGAGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCttatta                                                                                  >  1:2749083/1‑150 (MQ=255)
                                                                   tGGTCACTTAAAACATTATCAGAAATTCCGAAGGGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCttatta                                                                                  >  1:2736346/1‑150 (MQ=255)
                                                                      tCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGTAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACaa                                                                               >  1:1173287/1‑150 (MQ=255)
                                                                        aCTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagt                                                                             <  1:2099191‑M2/150‑74 (MQ=255)
                                                                          ttAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCt                                                                           <  1:3042868/150‑1 (MQ=255)
                                                                          ttAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCt                                                                           >  1:2567289/1‑150 (MQ=255)
                                                                            aaaaCATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatat                                                                         <  1:109197‑M2/150‑78 (MQ=255)
                                                                            aaaaCATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCtat                                                                         <  1:3119037/150‑1 (MQ=255)
                                                                                cATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcgg                                                                     <  1:74771‑M2/150‑82 (MQ=255)
                                                                                cATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGAt                                                                     <  1:1554338/150‑1 (MQ=255)
                                                                                  ttATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTc                                                                   >  1:93312/1‑150 (MQ=255)
                                                                                    aTCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCAc                                                                 >  1:2844954/1‑150 (MQ=255)
                                                                                     tCAGAAATTCCGAAGTGAGTCCCTCTTTTT‑ATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACtt                                                               <  1:472900/150‑1 (MQ=255)
                                                                                     tCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACt                                                                <  1:106674/150‑1 (MQ=255)
                                                                                      cAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagt                                                               >  1:518539‑M2/1‑63 (MQ=255)
                                                                                      cAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACtt                                                               >  1:3000207/1‑150 (MQ=255)
                                                                                      cAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACtt                                                               >  1:1775511/1‑150 (MQ=255)
                                                                                       aGAAATTCCGAAGTGAGTCTCTCTTTTTTATTATGTTTGGGCCATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtg                                                              >  1:2934270‑M2/1‑62 (MQ=255)
                                                                                         aaaTTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcc                                                            <  1:2605277‑M2/150‑91 (MQ=255)
                                                                                          catTACGAAGAGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgccc                                                           <  1:2387790‑M2/149‑92 (MQ=255)
                                                                                            ttCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgccccc                                                         <  1:357550‑M2/150‑94 (MQ=255)
                                                                                              ccGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCt                                                       >  1:1810178/1‑150 (MQ=255)
                                                                                               cGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcccccagg                                                      <  1:2786636‑M2/150‑97 (MQ=255)
                                                                                                gAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcccccagga                                                     <  1:2371446‑M2/150‑98 (MQ=255)
                                                                                                  aGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAAcc                                                   <  1:789294/150‑1 (MQ=255)
                                                                                                    tGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCa                                                 >  1:2148051/1‑150 (MQ=255)
                                                                                                       gTCACTCTCTTCTATTATGTTTGTGCAATTAATTTTTTAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagctgaaatacattgggcttcagtgggtaagattatatgcggtaaagtgcccctag                                                       >  1:3055630‑M2/1‑46 (MQ=255)
                                                                                                           ctctTTTTTATTATGTTTGGGCGATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTaa                                          >  1:792797/1‑150 (MQ=255)
                                                                                                           ctctTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcccccaggaaggtttttatg                                          >  1:710210‑M2/1‑42 (MQ=255)
                                                                                                            tctTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcccccaggaaggtttttatga                                         >  1:185374‑M2/1‑41 (MQ=255)
                                                                                                             ctTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAAc                                        >  1:612693/1‑150 (MQ=255)
                                                                                                               tttttATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcccccaggaaggtttttatgattt                                      >  1:144655‑M2/1‑38 (MQ=255)
                                                                                                               tttttATTATGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcccccaggaaggtttttatgattt                                      >  1:2883489‑M2/1‑38 (MQ=255)
                                                                                                               tttttATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTc                                      >  1:2270785/1‑150 (MQ=255)
                                                                                                                ttttATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTCa                                     >  1:1845767/1‑150 (MQ=255)
                                                                                                                  ttattaTGTTTGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcccccaggaaggtttttatgattttca                                   >  1:1888069‑M2/1‑35 (MQ=255)
                                                                                                                      tatGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTCAACCACt                               <  1:453660/150‑1 (MQ=255)
                                                                                                                           ttGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTCAACCACTATCCt                          <  1:2973706/150‑1 (MQ=255)
                                                                                                                            tGGGCAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcccccaggaaggtttttatgattttcaaataaaatac                         >  1:1616467‑M2/1‑25 (MQ=255)
                                                                                                                              ggCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTCAACCACTATCCTGtc                       <  1:1535674/150‑1 (MQ=255)
                                                                                                                               gCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTCAACCACTATCCTGtca                      >  1:524660/1‑150 (MQ=255)
                                                                                                                                cAATTAATTTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcccccaggaaggtttttatgattttcaaataaaatactttg                     <  1:184352‑M2/150‑130 (MQ=255)
                                                                                                                                 aattaattTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcccccaggaaggtttttatgattttcaaataaaatactttga                    >  1:1941318‑M2/1‑20 (MQ=255)
                                                                                                                                 aattaattTTACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcccccaggaaggtttttatgattttcaaataaaatactttga                    <  1:2868924‑M2/150‑131 (MQ=255)
                                                                                                                                    taattTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTCAACCACTATCCTGTCATCata                 <  1:1468974/150‑1 (MQ=255)
                                                                                                                                     aattTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGATTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTCAACCACTATCCTGTCATCatat                >  1:2853938/1‑150 (MQ=255)
                                                                                                                                       ttttACAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcccccaggaaggtttttatgattttcaaataaaatactttgaacacaa              <  1:2923232‑M2/150‑137 (MQ=255)
                                                                                                                                            cAACTTACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcccccaggaaggtttttatgattttcaaataaaatactttgaacacaaaaacc         >  1:1019719‑M2/1‑9 (MQ=255)
                                                                                                                                            cAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTCAACCACTATCCTGTCATCATATGCAATTg         <  1:2450481/150‑1 (MQ=255)
                                                                                                                                              aCTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTCAACCACTATCCTGTCATCATATGCAATTGCt       >  1:2066510/1‑150 (MQ=255)
                                                                                                                                                 tACCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcccccaggaaggtttttatgattttcaaataaaatactttgaacacaaaaaccctgcg    <  1:2179750‑M2/150‑147 (MQ=255)
                                                                                                                                                 tACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTCAACCACTATCCTGTCATCATATGCAATTGCtttt    >  1:38505/1‑150 (MQ=255)
                                                                                                                                                  aCCccgtaaagctctatgatacaatggtggattttttgaaacagcagaaatacattgagcttcagtgggtaagagtatatgcggtaaagtgcccccaggaaggtttttatgattttcaaataaaatactttgaacacaaaaaccctgcgg   >  1:569486‑M2/1‑3 (MQ=255)
                                                                                                                                                  aCCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTCAACCACTATCCTGTCATCATATGCAATTGCttttt   <  1:1728719/150‑1 (MQ=255)
                                                                                                                                                  aCCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTCAACCACTATCCTGTCATCATATGCAATTGCttttt   <  1:1131096/150‑1 (MQ=255)
                                                                                                                                                  aCCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTACTTCTAACCCAGACTTAAACTCAACCACTATCCTGTCATCATATGCAATTGCttttt   >  1:2093986/1‑150 (MQ=255)
                                                                                                                                                   ccATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTCAACCACTATCCTGTCATCATATGCAATTGCTTTTTc  <  1:2308190/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TTTAAAATGTCTTTCCTTCGTGGTATTATTATGTTGACTCATTTCGGTTCCTCCAATGTTTTTTGTATGGTCACTTAAAACATTATCAGAAATTCCGAAGTGAGTCACTCTTTTTTATTATGTTTGGGCAATTAATTTTACAACTTACCATACAATTATATAAAATAAACGCCGCCAATTAAGAAGGTTTCCTCCTCAACTGGCGGCAATCTTATTACAATCCTATAGATTCACTTCTATTTCTAACCCAGACTTAAACTCAACCACTATCCTGTCATCATATGCAATTGCTTTTTC  >  CP002416/2790142‑2790438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.