Predicted mutation
evidence seq id position mutation annotation gene description
RA CP002416 677,297 A→G intergenic (+941/+1706) Clo1313_0606 → / ← Clo1313_0609 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP002416677,2970AG100.0% 668.6 / NA 184intergenic (+941/+1706)Clo1313_0606/Clo1313_0609hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (84/100);  total (84/100)

Only 100 of 191 total aligned reads displayed.

TAAAGGAAAATGTTGTGGATATCGGTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGAACAATTATGATAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTATAATAATGCAATTGCAAATGCACAC  >  CP002416/677150‑677443
                                                                                                                                                   |                                                                                                                                                  
tAAAGGAAAATGTTGTGGATATCGGTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATggtag                                                                                                                                                 <  1:2814707/151‑1 (MQ=255)
 aaaGGAAAATGTTGTGGATATCGGTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATggtaga                                                                                                                                                >  1:4141965/1‑151 (MQ=255)
 aaaGGAAAATGTTGTGGATATCGGTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATggtaga                                                                                                                                                <  1:1256860/151‑1 (MQ=255)
 aaaGGAAAATGTTGTGGATATCGGTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATggtaga                                                                                                                                                >  1:1550567/1‑151 (MQ=255)
    ggAAAATGTTGTGGATATCGGTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGatat                                                                                                                                             <  1:4059495/151‑1 (MQ=255)
      aaaaTGTTGTGGATATCGGTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATAttt                                                                                                                                           <  1:2560577/151‑1 (MQ=255)
      aaaaTGTTGTGGATATCGGCAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGATGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATAttt                                                                                                                                           >  1:3127703/1‑151 (MQ=14)
       aaaTGTTGTGGATATCGGTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATAtttt                                                                                                                                          >  1:106022/1‑151 (MQ=255)
         atgtattgGATATCGGTAATAGTACTGTTTGCAATCTCTTAAAAAAAAGAAACACGGTTTATTGAATAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGTAAAATCTATGGGAAAATTATGGTAGATATTTTTa                                                                                                                                        <  1:2135042/145‑1 (MQ=11)
             tgtgGATATCGGTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCa                                                                                                                                    <  1:2797331/151‑1 (MQ=255)
              gtgGATATCGGTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCAt                                                                                                                                   >  1:2984722/1‑151 (MQ=255)
                    atcagTAATAGTACAGTTTACAATCTCGTAAAAAAAAGAATCACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTTATGATTTTGCTATTAAAAAGAAAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCatttg                                                                                                                             <  1:2826663/147‑5 (MQ=14)
                    atCGGTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATa                                                                                                                             <  1:2882602/151‑1 (MQ=255)
                     tCGGTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATAc                                                                                                                            >  1:2159440/1‑151 (MQ=255)
                     tCGGTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATAc                                                                                                                            <  1:1852484/151‑1 (MQ=255)
                      cGGTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACt                                                                                                                           <  1:77292/151‑1 (MQ=255)
                       ggTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACtt                                                                                                                          <  1:3856061/151‑1 (MQ=255)
                        gTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTg                                                                                                                         <  1:1579603/151‑1 (MQ=255)
                         tAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGa                                                                                                                        <  1:1799102/151‑1 (MQ=255)
                          aaaaGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGat                                                                                                                       <  1:4207850/151‑1 (MQ=255)
                          aaaaGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGat                                                                                                                       >  1:1443431/1‑151 (MQ=255)
                          aaaaGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGat                                                                                                                       <  1:662742/151‑1 (MQ=255)
                            aaGTACAGTTTGCAATCTCTTAAAAAAAAGAAACTCTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGatat                                                                                                                     <  1:3193696/151‑1 (MQ=255)
                             aGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATg                                                                                                                    <  1:910564/151‑1 (MQ=255)
                             aGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATg                                                                                                                    <  1:1350278/151‑1 (MQ=255)
                               tACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATTCTTGATGTGAt                                                                                                                  <  1:2009634/151‑1 (MQ=14)
                               tACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGAt                                                                                                                  <  1:2637663/151‑1 (MQ=255)
                                  aGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGa                                                                                                               <  1:2505811/151‑1 (MQ=255)
                                   gTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGAc                                                                                                              >  1:1904588/1‑151 (MQ=255)
                                    tttGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACt                                                                                                             <  1:3943038/151‑1 (MQ=255)
                                    tttGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACt                                                                                                             <  1:2447533/151‑1 (MQ=255)
                                    tttGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACt                                                                                                             <  1:4087007/151‑1 (MQ=255)
                                        cAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAg                                                                                                         >  1:1068435/1‑151 (MQ=255)
                                         aaTCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAgg                                                                                                        <  1:303809/151‑1 (MQ=255)
                                         aaTCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAgg                                                                                                        <  1:3991940/151‑1 (MQ=255)
                                         aaTCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAgg                                                                                                        <  1:4298207/151‑1 (MQ=255)
                                         aaTCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAgg                                                                                                        >  1:1931499/1‑151 (MQ=255)
                                           tctcTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGa                                                                                                      >  1:2027166/1‑151 (MQ=255)
                                            ctctTAAAAAAA‑GAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGAtt                                                                                                    <  1:3032003/151‑1 (MQ=255)
                                             tctTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGAtt                                                                                                    >  1:1506417/1‑151 (MQ=255)
                                               ttAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTAt                                                                                                  <  1:2169577/151‑1 (MQ=255)
                                                tAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATg                                                                                                 >  1:5766/1‑151 (MQ=255)
                                                 aaaaaaaaGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATga                                                                                                <  1:1724557/151‑1 (MQ=255)
                                                    aaaaaGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGAc                                                                                             >  1:3010861/1‑151 (MQ=255)
                                                     aaaaGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACt                                                                                            >  1:3539340/1‑151 (MQ=255)
                                                      aaaGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTg                                                                                           <  1:3977381/151‑1 (MQ=255)
                                                         gAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGttt                                                                                        <  1:245849/151‑1 (MQ=255)
                                                          aaaCACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTg                                                                                       >  1:1623631/1‑151 (MQ=255)
                                                               cTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGt                                                                                  >  1:2143317/1‑151 (MQ=16)
                                                               cTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGt                                                                                  <  1:205649/151‑1 (MQ=16)
                                                                tGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTg                                                                                 <  1:3506711/151‑1 (MQ=16)
                                                                tGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTg                                                                                 <  1:226334/151‑1 (MQ=16)
                                                                 ggTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTgg                                                                                <  1:1382351/151‑1 (MQ=12)
                                                                    tgttgACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTa                                                                             <  1:1814550/151‑1 (MQ=12)
                                                                     gttgACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTaa                                                                            <  1:3698743/151‑1 (MQ=12)
                                                                       tgACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTaaaa                                                                          >  1:4131356/1‑151 (MQ=12)
                                                                             aaaGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACatat                                                                    >  1:2636124/1‑151 (MQ=12)
                                                                             aaaGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACatat                                                                    <  1:204531/151‑1 (MQ=12)
                                                                              aaGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATc                                                                   >  1:509389/1‑151 (MQ=12)
                                                                                 aCAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCaa                                                                >  1:2212211/1‑151 (MQ=19)
                                                                                  cAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCaaa                                                               <  1:3322804/151‑1 (MQ=255)
                                                                                      aaCAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCtt                                                           >  1:3376168/1‑151 (MQ=255)
                                                                                         aGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAgt                                                        <  1:742058/151‑1 (MQ=255)
                                                                                         aGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAgt                                                        >  1:944531/1‑151 (MQ=255)
                                                                                          gttgttTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAgtg                                                       <  1:2722472/151‑1 (MQ=255)
                                                                                          gttgttTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGCACATTTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAgtg                                                       >  1:2677195/1‑151 (MQ=255)
                                                                                            tgttTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGtgtg                                                     <  1:378751/151‑1 (MQ=255)
                                                                                              tttGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGat                                                   <  1:370343/151‑1 (MQ=255)
                                                                                                tGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGatat                                                 >  1:490285/1‑151 (MQ=255)
                                                                                                     tgatgaTTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAaga                                            >  1:1423222/1‑151 (MQ=255)
                                                                                                     tgatgaTTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAaga                                            <  1:3740586/151‑1 (MQ=255)
                                                                                                       atgatTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAgaga                                          >  1:1958897/1‑151 (MQ=255)
                                                                                                        tgatTTTGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGAt                                         <  1:3384033/151‑1 (MQ=255)
                                                                                                            tttGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGAt                                     <  1:3833816/151‑1 (MQ=255)
                                                                                                            tttGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGAt                                     >  1:1994769/1‑151 (MQ=255)
                                                                                                             ttGCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATc                                    <  1:2855145/151‑1 (MQ=255)
                                                                                                               gCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTg                                  >  1:35906/1‑151 (MQ=255)
                                                                                                               gCTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTg                                  >  1:711328/1‑151 (MQ=255)
                                                                                                                cTATTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGt                                 >  1:1337989/1‑151 (MQ=255)
                                                                                                                  aTTAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTa                               <  1:1608138/151‑1 (MQ=255)
                                                                                                                    tAAAAAGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATc                             >  1:1233190/1‑151 (MQ=255)
                                                                                                                     aaaaaGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCt                            >  1:956547/1‑151 (MQ=255)
                                                                                                                      aaaaGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCta                           <  1:2481316/151‑1 (MQ=255)
                                                                                                                      aaaaGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCta                           >  1:3466016/1‑151 (MQ=255)
                                                                                                                       aaaGCGAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCtat                          <  1:1760265/151‑1 (MQ=255)
                                                                                                                            gAAAAAGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTAtaataa                     <  1:4016744/151‑1 (MQ=255)
                                                                                                                              aaaaGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTATAATAATg                   >  1:1492329/1‑151 (MQ=255)
                                                                                                                              aaaaGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTATAATAATg                   <  1:110453/151‑1 (MQ=255)
                                                                                                                              aaaaGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTATAATAATg                   >  1:3820938/1‑151 (MQ=255)
                                                                                                                               aaaGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTATAATAATGc                  >  1:2563208/1‑151 (MQ=255)
                                                                                                                                aaGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTATAATAATGCa                 >  1:105817/1‑151 (MQ=255)
                                                                                                                                 aGCTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTATAATAATGCaa                >  1:153925/1‑151 (MQ=255)
                                                                                                                                   cTATGGGAGAATTATGGTAGATATTTTTACGCATCAAATTCGTGGTATTATTGACTCAAGAGATTATGAGACTGTTTGCGAGTGGTTAAAAGCATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGGTATCTATGATAATGCAAtt              <  1:3248745/151‑1 (MQ=11)
                                                                                                                                   cTATGGGACAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTATAATAATGCAAtt              >  1:557684/1‑151 (MQ=255)
                                                                                                                                      tgggaCAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTATAATAATGCAATTGCa           <  1:4003308/147‑1 (MQ=255)
                                                                                                                                        ggaCAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTATAATAATGCAATTGCaaa         <  1:2401909/149‑1 (MQ=25)
                                                                                                                                          aCAATTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTATAATAATGCAATTGCAAATg       >  1:1666454/1‑151 (MQ=25)
                                                                                                                                            aaTTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTATAATAATGCAATTGCAAATGca     >  1:1718677/1‑151 (MQ=25)
                                                                                                                                            aaTTATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTATAATAATGCAATTGCAAATGca     >  1:892249/1‑151 (MQ=25)
                                                                                                                                               tATGGTAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTATAATAATGCAATTGCAAATGCacac  <  1:4281343/151‑1 (MQ=25)
                                                                                                                                                   |                                                                                                                                                  
TAAAGGAAAATGTTGTGGATATCGGTAAAAGTACAGTTTGCAATCTCTTAAAAAAAAGAAACACTGGTTGTTGACAAAAAGACAGTAACAGTTGTTTGCATTGATGATTTTGCTATTAAAAAGCGAAAAAGCTATGGAACAATTATGATAGATATTTTTACGCATCAAATACTTGATATGATTGACTCAAGGGATTATGAGACTGTTTGCGAGTGGTTAAAAACATATCCAAATCTTAGTGTGATATCAAGAGATGGATCTGTTATCTATAATAATGCAATTGCAAATGCACAC  >  CP002416/677150‑677443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑