BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP002416	1,410,155	C→T	intergenic (+25/‑217)	Clo1313_1186 → / → Clo1313_1187	acetate kinase/protein of unknown function DUF177

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP002416	1,410,155	0	C	T	100.0%	578.6 / NA	146	intergenic (+25/‑217)	Clo1313_1186/Clo1313_1187	acetate kinase/protein of unknown function DUF177
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (64/82); total (64/82)

Only 100 of 146 total aligned reads displayed.

AAGTGAAAGGCAAAGAAGCGGATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCCTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTATTTAAGCCAATCT  >  CP002416/1410009‑1410300

aaGTGAAAGGCAAAGAAGCGGATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGtt                                                                                                                                               >  1:3470886/1‑151 (MQ=255)

  gTGAAAGGCAAAGAAGCGGATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGtttt                                                                                                                                             >  1:1019597/1‑151 (MQ=255)

    gAAAGGCAAAGAAGCGGATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGtttttt                                                                                                                                           >  1:971723/1‑151 (MQ=255)

    gAAAGGCAAAGAAGCGGATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGtttttt                                                                                                                                           <  1:2894494/151‑1 (MQ=255)

    gAAAGGCAAAGAAGCGGATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGtttttt                                                                                                                                           >  1:2099087/1‑151 (MQ=255)

    gAAAGGCAAAGAAGCGGATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGtttttt                                                                                                                                           <  1:472441/151‑1 (MQ=255)

      aaGGCAAAGAAGCGGATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTa                                                                                                                                         >  1:2838760/1‑151 (MQ=255)

      aaGGCAAAGAAGCGGATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTa                                                                                                                                         >  1:2605100/1‑151 (MQ=255)

         gCAAAGAAGCGGATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGa                                                                                                                                      >  1:1617445/1‑151 (MQ=255)

            aagaagCGGATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAAc                                                                                                                                   <  1:3223614/151‑1 (MQ=255)

              gaagCGGATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACgg                                                                                                                                 <  1:2770540/151‑1 (MQ=255)

               aagCGGATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACggg                                                                                                                                >  1:1166793/1‑151 (MQ=255)

                 gCGGATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCt                                                                                                                              <  1:3265656/151‑1 (MQ=255)

                   ggATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACCTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTg                                                                                                                            <  1:3309558/151‑1 (MQ=255)

                        tCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTaaaa                                                                                                                       >  1:2106888/1‑151 (MQ=255)

                        tCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTaaaa                                                                                                                       >  1:3352234/1‑151 (MQ=255)

                        gcAGTGCTCCCGAGGCGAAAGTAAAGTCTTTGTTTAACCCGAAAAAGGAGGAGCTTGAGATTGCAAGGGAGATTTTAAGATTTGTAAAAACCTTAAAAAAGATGCGTTAAAATTTTACAAGCTTGTTTTTGTAGGAAACGGGCTTGTaaaa                                                                                                                       <  1:736684/150‑1 (MQ=255)

                            tGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAatttt                                                                                                                   <  1:2059828/151‑1 (MQ=255)

                               tCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAattttttt                                                                                                                >  1:1625605/1‑151 (MQ=255)

                               tCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAattttttt                                                                                                                <  1:390802/151‑1 (MQ=255)

                                   gATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTCTAGGAAACGGGCTTGTAAAatttttttattt                                                                                                            <  1:230606/151‑1 (MQ=255)

                                    aTGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGGAACGGGCTTGTAAAatttttttatttt                                                                                                           >  1:1268076/1‑151 (MQ=255)

                                     tGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAatttttttattttt                                                                                                          <  1:483492/151‑1 (MQ=255)

                                     tGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAatttttttattttt                                                                                                          <  1:1779196/151‑1 (MQ=255)

                                     tGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAatttttttattttt                                                                                                          >  1:2994199/1‑151 (MQ=255)

                                      gCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAatttttttatttttt                                                                                                         <  1:847942/151‑1 (MQ=255)

                                      gCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAatttttttatttttt                                                                                                         <  1:348385/151‑1 (MQ=255)

                                       cGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAatttttttattttttt                                                                                                        <  1:3001323/151‑1 (MQ=255)

                                           aGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCg                                                                                                    <  1:340775/151‑1 (MQ=255)

                                               aaGACTTTGGTTATCCCGACAACTGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGtt                                                                                                >  1:2121111/1‑151 (MQ=255)

                                                 gACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGtttt                                                                                              >  1:2508903/1‑151 (MQ=255)

                                                  aCTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGttttt                                                                                             >  1:1115741/1‑151 (MQ=255)

                                                   cTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGtttttt                                                                                            >  1:1838656/1‑151 (MQ=255)

                                                   cTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGtttttt                                                                                            <  1:429030/151‑1 (MQ=255)

                                                    ttttgTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTc                                                                                           <  1:275186/147‑1 (MQ=255)

                                                      tGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCtt                                                                                         <  1:3268574/151‑1 (MQ=255)

                                                       ggTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTg                                                                                        >  1:1109785/1‑151 (MQ=255)

                                                       ggTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTg                                                                                        <  1:211499/151‑1 (MQ=255)

                                                           aTCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTAtt                                                                                    >  1:717184/1‑151 (MQ=255)

                                                            tCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAACTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTa                                                                                   <  1:543307/151‑1 (MQ=255)

                                                             cccGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTaa                                                                                  >  1:3014726/1‑151 (MQ=255)

                                                                  cAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATGTTTTTGCCGGGTTTTTTCTTGCATTACTAtgt                                                                             >  1:3092470/1‑151 (MQ=255)

                                                                     aTGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGa                                                                          <  1:1706146/151‑1 (MQ=255)

                                                                      tGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGaa                                                                         >  1:2074318/1‑151 (MQ=255)

                                                                       gaggagCTTGTGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAat                                                                        <  1:290146/151‑1 (MQ=255)

                                                                       gaggagCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAat                                                                        <  1:1859317/151‑1 (MQ=255)

                                                                          gagCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATg                                                                     <  1:627556/151‑1 (MQ=255)

                                                                           agCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGt                                                                    <  1:348839/151‑1 (MQ=255)

                                                                            gCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGtt                                                                   <  1:352795/151‑1 (MQ=255)

                                                                                 agaTTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTtaataa                                                              <  1:1692970/151‑1 (MQ=255)

                                                                                       cAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTaa                                                        <  1:3304873/151‑1 (MQ=255)

                                                                                         aGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTaaga                                                      <  1:454905/151‑1 (MQ=255)

                                                                                          gggAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTaagaa                                                     <  1:1276255/151‑1 (MQ=255)

                                                                                            gagaCTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAagaaga                                                   >  1:3462378/1‑151 (MQ=255)

                                                                                             agaCTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAgaagaa                                                  <  1:1407986/151‑1 (MQ=255)

                                                                                             agaCTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAgaagaa                                                  <  1:2137149/151‑1 (MQ=255)

                                                                                               aCTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAAt                                                >  1:2810809/1‑151 (MQ=255)

                                                                                                 tttAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTc                                              >  1:2247904/1‑151 (MQ=255)

                                                                                                 tttAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTATTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTc                                              <  1:3361922/151‑1 (MQ=255)

                                                                                                       aCTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAAtt                                        >  1:948123/1‑151 (MQ=255)

                                                                                                       aCTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAAtt                                        <  1:1508915/151‑1 (MQ=255)

                                                                                                       aCTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAAtt                                        <  1:183442/151‑1 (MQ=255)

                                                                                                       aCTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAAtt                                        >  1:2565111/1‑151 (MQ=255)

                                                                                                         ttGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTAGTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTa                                      >  1:660608/1‑151 (MQ=255)

                                                                                                          tGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTaa                                     >  1:2843966/1‑151 (MQ=255)

                                                                                                             aaaaaaCTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTa                                  <  1:1022467/151‑1 (MQ=255)

                                                                                                             aaaaaaCTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTa                                  >  1:310360/1‑151 (MQ=255)

                                                                                                              aaaaaCTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTaa                                 >  1:1020933/1‑151 (MQ=255)

                                                                                                              aaaaaCTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTaa                                 >  1:2449491/1‑151 (MQ=255)

                                                                                                               aaaaCTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTaaa                                >  1:3013830/1‑151 (MQ=255)

                                                                                                                 aaCTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACa                              <  1:1637790/151‑1 (MQ=255)

                                                                                                                 aaCTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACa                              >  1:1801648/1‑151 (MQ=255)

                                                                                                                   cTTATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACaaa                            >  1:382778/1‑151 (MQ=255)

                                                                                                                    ttATAAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACaaaa                           >  1:1234553/1‑151 (MQ=255)

                                                                                                                      ataAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAatt                         >  1:1902859/1‑151 (MQ=255)

                                                                                                                      ataAAAGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAatt                         <  1:3159000/151‑1 (MQ=255)

                                                                                                                        aaaaGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAattat                       <  1:197259/151‑1 (MQ=255)

                                                                                                                          aaGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTAttt                     >  1:2336751/1‑151 (MQ=255)

                                                                                                                          aaGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTAttt                     >  1:2276614/1‑151 (MQ=255)

                                                                                                                          aaGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTAttt                     <  1:1987862/151‑1 (MQ=255)

                                                                                                                          aaGATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTAttt                     <  1:971722/151‑1 (MQ=255)

                                                                                                                            gATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTAttttt                   <  1:1490690/151‑1 (MQ=255)

                                                                                                                            gATGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTAttttt                   <  1:1150953/151‑1 (MQ=255)

                                                                                                                             aTGCGTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTg                  <  1:2551265/151‑1 (MQ=255)

                                                                                                                                 gTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTAt              >  1:2110641/1‑151 (MQ=255)

                                                                                                                                 gTTATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTAt              >  1:747583/1‑151 (MQ=255)

                                                                                                                                  ttATAATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTAtt             <  1:732523/151‑1 (MQ=255)

                                                                                                                                   tataATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTAttt            <  1:818463/151‑1 (MQ=255)

                                                                                                                                    ataATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTATTTa           >  1:1866011/1‑151 (MQ=255)

                                                                                                                                     tatttttACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTATTTaa          >  1:676447/4‑151 (MQ=255)

                                                                                                                                     taATTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTATTTaa          <  1:630364/151‑1 (MQ=255)

                                                                                                                                      aaTTTTACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTATTTAAg         <  1:561107/151‑1 (MQ=255)

                                                                                                                                        ttttACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTATTTAAGcc       >  1:1242288/1‑151 (MQ=255)

                                                                                                                                         tttACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTATTTAAGCCa      <  1:723946/151‑1 (MQ=255)

                                                                                                                                         tttACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTATTTAAGCCa      <  1:1580771/151‑1 (MQ=255)

                                                                                                                                         tttACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTATTTAAGCCa      <  1:3418953/151‑1 (MQ=255)

                                                                                                                                          ttACAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTATTTAAGCCaa     >  1:2205675/1‑151 (MQ=255)

                                                                                                                                             cAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTATTTAAGCCAATCt  >  1:2605403/1‑151 (MQ=255)

                                                                                                                                             cAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTATTTAAGCCAATCt  <  1:812398/151‑1 (MQ=255)

                                                                                                                                             cAAGCTTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTATTTAAGCCAATCt  <  1:3176001/151‑1 (MQ=255)

AAGTGAAAGGCAAAGAAGCGGATATCAGTGCTCCCGATGCGAAAGTAAAGACTTTGGTTATCCCGACAAATGAGGAGCTTGAGATTGCAAGGGAGACTTTAAGACTTGTAAAAAACTTATAAAAGATGCGTTATAATTTTACAAGCCTGTTTTTTTAGGAAACGGGCTTGTAAAATTTTTTTATTTTTTTGCCGGGTTTTTTCTTGTATTAATATGTGGAATATGTTAATAATATTAAGAAGAAATTCCGAATTTAACTAAACAAAATTATTTTTGTTATTTAAGCCAATCT  >  CP002416/1410009‑1410300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`