| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP002416 | 711,589 | A→G | T922T (ACA→ACG) | Clo1313_0628 → | cellulosome anchoring protein cohesin region |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP002416 | 711,589 | 0 | A | G | 85.2% | 33.3 / 0.6 | 27 | T922T (ACA→ACG) | Clo1313_0628 | cellulosome anchoring protein cohesin region |
| Reads supporting (aligned to +/- strand): ref base A (4/0); new base G (10/13); total (14/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.78e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACCGTCAGACGAGCCAACGCCATCTGACGAACCAACACCGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACACCATCTGACGAACCGACACCGTCTGATGAGCCAACACCATCTGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCG > CP002416/711442‑711667 | acCGTCAGACGAGCCAACGCCATCTGACGAACCAACACCGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACACCGGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACACCa > 1:1648089/1‑151 (MQ=255) gTCAGACGAGCCAACGCCATCTGACGAACCAACACCGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCt > 1:1275612/1‑151 (MQ=17) tCAGACGAGCCAACGCCATCTGACGAACCAACACCGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGAAACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTg > 1:510101/1‑151 (MQ=12) aGACGAGCCAACGCCATCTGACGAACCAACACCGTCTGATGAGCCAACACCATCAGATGAACCGACTCCGTCAGAGACACCAGAGGAATCGATACCGGCGGGTAAACCATCAGATGAACCGACACCGCCAGATCAGCCAACACCaagtgac > 1:1384752/1‑145 (MQ=11) aCGAGCCAACGCCATCTGACGAACCAACACCGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGGCGGCTACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGa > 1:2880077/1‑151 (MQ=255) gAGCCAACGCCATCTGACGAACCAACACCGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAAc > 1:1259840/1‑151 (MQ=17) gAGCCAACGCCATCTGACGAACCAACACCGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAAc > 1:2591993/1‑151 (MQ=17) gAGCCAACGCCATCTGACGAACCAACACCGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGAAACCAGAGGAGACGATACCGGCGGATACACCATCAGATGAACCGACACCGTCAGACGCGCCAACGCAATCTGACGAAc > 1:974741/1‑151 (MQ=11) aaCGCCATCTGACGAACCAACACCGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGaca > 1:385278/1‑151 (MQ=25) cGCCATCTGACGAACCAACACCGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACAcc > 1:2758945/1‑151 (MQ=25) tcggacgacCCAACCCCGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACGCCTGAGGAGCCGATACCGACGGCTACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCtg < 1:905535/148‑1 (MQ=11) tCTGACGAACCAACACCGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCtg < 1:1433067/151‑1 (MQ=25) ccTGACGATCCAGCCCCGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCtg < 1:2526612/150‑1 (MQ=11) aggacgcAACGCCGTCGGATGATCCAACACCGTCCGATGAACCTACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAGCCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCtgatga < 1:1572888/145‑1 (MQ=11) ggagccAACACCGTCGCATGATCCAACCCCGTCCGATGAACCGACGCCGCCAGAGACAACAGAGGAGCCGAGACCAACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCTGATGAg < 1:1957227/147‑1 (MQ=11) ccAACACCGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCTGATGAGCCaa < 1:2267495/151‑1 (MQ=21) ccgccggatgaGCCAACTCCGTCAGATGAACCGACTCCGTCAGAGACACCGGAGGCGCCGATACCCGCGCAGACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCTGATGAGCCAACACCAt < 1:1330744/145‑1 (MQ=11) cGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCTGATGAGCCAACACCATc > 1:3161649/1‑151 (MQ=17) tgatgaGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCTGATGAGCCAACACCATCtgat < 1:1520604/151‑1 (MQ=17) gaGCCAACACCGTCAGATGAGCCGACTCCGTCAGAGACGCCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCTGATGAGCCAACACCATCTGATGAAc < 1:3269666/151‑1 (MQ=255) cccactccGTCAGATGAACCGACTCCGTCGGAGACACCGGAGGAGCCGACACCGACGGATACACCATCAGACGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCTGATGAGCCAACACCATCTGATGAACCGa < 1:1417272/145‑1 (MQ=11) ccAACACCGTCAGATGAACCGACGCCGTCAGAGGCACCTGAGGAGCCGATGCCGCCGGATACCCCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCTGATGAGCCAACACCATCTGATGAACCGa < 1:1326792/151‑1 (MQ=11) cAACACCGTCAGATGAACCGACTCCGTCAGAGACACCCGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCTGATGAGCCAACACCATCTGATGAACCGAc > 1:1687862/1‑151 (MQ=12) aaCACCGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCTGATGAGCCAACACCATCTGATGAACCGACt < 1:3157125/151‑1 (MQ=17) cgccGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCTGATGAGCCAACACCATCTGATGAACCGAcacc > 1:467386/3‑148 (MQ=9) cGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACGCCATCTGACGAACCGACACCGTCTGATGAGCCAACACCATCTGATGAACCGACTCCGTc < 1:2090060/151‑1 (MQ=11) gATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACACCATCTGACGAACCGACACCGGCAGATGAGCCAACACCATCTGATGAACCGACTCCGACAgaga > 1:1492721/1‑151 (MQ=255) ccGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACACCATCTGACGAACCAACACCGTCAGATGAGCCAACACCATCTGACGAACCGACGCCGACAGACACACCTGAAGAGc > 1:1432188/1‑151 (MQ=11) gTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGGTGAACCGACACCGTCAGACGAGCCAGCACCATCTGACGAACCGACACCGTCTGACGAGCCAACACCATCTGATGAACCGACCCCGTCAGAGACACCTgagcaaccg > 1:2900009/1‑145 (MQ=11) | ACCGTCAGACGAGCCAACGCCATCTGACGAACCAACACCGTCTGATGAGCCAACACCGTCAGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCGATACCGACGGATACACCATCAGATGAACCGACACCGTCAGACGAGCCAACACCATCTGACGAACCGACACCGTCTGATGAGCCAACACCATCTGATGAACCGACTCCGTCAGAGACACCTGAGGAGCCG > CP002416/711442‑711667 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |