Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0024163,168,8700TG30.4% 301.6 / 45.0 139I389I (ATA→ATC) Clo1313_2694recombination helicase AddA
Reads supporting (aligned to +/- strand):  ref base T (9/87);  new base G (42/0);  total (52/87)
Fisher's exact test for biased strand distribution p-value = 6.13e-27
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 142 total aligned reads displayed.

ACATCTCCCACCATAAATACACCGGGACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCTTTACCAAGTTTGCCAGGCATTTCATTTTTG  >  CP002416/3168721‑3169018
                                                                                                                                                     |                                                                                                                                                     
aCATCTCCCACCATAAATACACCGGGACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGta                                                                                                                                                      <  1:2791015/151‑1 (MQ=255)
  aTCTCCCACCATAAATACACCGGGACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGtatt                                                                                                                                                    >  1:565665/1‑151 (MQ=255)
   tctcCCACCATAAATACACCGGGACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTTTGGGAGGtattt                                                                                                                                                   >  1:966364/1‑150 (MQ=255)
     tcCCACCATAAATACACCGGGACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATg                                                                                                                                                 <  1:2366295/151‑1 (MQ=255)
     tcCCACCATAAATACACCGGGACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATg                                                                                                                                                 <  1:2427501/151‑1 (MQ=255)
               aaTACACCGGGACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGGAGGTATTATGCCT‑cccgcct                                                                                                                                      >  1:2729232/1‑146 (MQ=255)
                aTACACCGGGACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTc                                                                                                                                     <  1:1382858/151‑1 (MQ=255)
                 tACACCGGGACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGGAGGGATTTTGCTT‑CCGtcctcc                                                                                                                                    >  1:1082312/1‑151 (MQ=255)
                 tACACCGGGACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTcc                                                                                                                                    <  1:3000162/151‑1 (MQ=255)
                 tACACCGGGACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGGCTTTTGCTT‑ccccctttc                                                                                                                                    >  1:944864/1‑144 (MQ=255)
                 tACACCGGGACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGGATTATGCTT‑CCGTCTTcc                                                                                                                                    >  1:3211907/1‑151 (MQ=255)
                  acacCGGGACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGGAGGGAATTTGCTT‑CCGTccttcc                                                                                                                                   >  1:1854782/1‑146 (MQ=255)
                   cacCGGGACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGGAGGGATTATGCCT‑CCGtctttctt                                                                                                                                  >  1:259148/1‑151 (MQ=255)
                       gggACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCctttctt                                                                                                                              <  1:714410/151‑1 (MQ=255)
                       gggACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCctttctt                                                                                                                              <  1:1709721/151‑1 (MQ=255)
                          aCTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTGTTTTTCTT‑CCGTCTTCCTttttttct                                                                                                                           >  1:1983922/1‑151 (MQ=255)
                          aCTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTttctttct                                                                                                                           <  1:1572362/151‑1 (MQ=255)
                          aCTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTttctttct                                                                                                                           <  1:1389309/151‑1 (MQ=255)
                           cTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTg                                                                                                                          <  1:282842/151‑1 (MQ=255)
                           cTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTg                                                                                                                          <  1:2416883/151‑1 (MQ=255)
                           cTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTg                                                                                                                          <  1:792855/151‑1 (MQ=255)
                            ttGCGTCATCCCCTTTGGATATCATATTGCTAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGt                                                                                                                         <  1:759086/151‑1 (MQ=255)
                            ttGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGGATTATGCTT‑CCGTCTTCCTTTCTTTCTGt                                                                                                                         >  1:396898/1‑151 (MQ=255)
                             tGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTa                                                                                                                        <  1:2250891/151‑1 (MQ=255)
                              gCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTaa                                                                                                                       <  1:2704109/151‑1 (MQ=255)
                               cGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAg                                                                                                                      <  1:372993/151‑1 (MQ=255)
                                 tCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTTGAAGGGATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGaa                                                                                                                    >  1:1321298/1‑151 (MQ=255)
                                  cATCCCCTTTGGATATCATATTGATAACGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAAt                                                                                                                   <  1:2395921/151‑1 (MQ=255)
                                    tCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTTTGGGAGGGAATATTTTT‑CCGCCTTTCTTTCTTTTTGTAAAAAtat                                                                                                                 >  1:2242320/1‑149 (MQ=255)
                                     ccccTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGGATTATGCCT‑CCGTCTTCCTTTCTTTCTGTAAGAAtctc                                                                                                                >  1:1217357/1‑151 (MQ=255)
                                           tGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACa                                                                                                          <  1:1705050/151‑1 (MQ=255)
                                            ggATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTTGGAGGGATTATGCTT‑CCCTCTTCCTTTTTTTCTGTAAGAATCTCCAGaaca                                                                                                         >  1:1445920/1‑148 (MQ=255)
                                              atatCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACaaaa                                                                                                       <  1:424055/151‑1 (MQ=255)
                                              atatCATATTGATAATGGACTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTCGCAGGGATTATACTC‑CCGTCTTCCTTTCTTTTTGTTAGAATTTCCacaaaaaa                                                                                                       >  1:2317441/1‑144 (MQ=255)
                                                atCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAAt                                                                                                     <  1:2164187/151‑1 (MQ=255)
                                                atCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGGATTATGCTT‑CCGCCTTCCTTTTTTTTTGTAAGAATATCCAGACAAAAAt                                                                                                     >  1:2720462/1‑151 (MQ=255)
                                                atCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCCGGAAAGGATTATGGTT‑CCGTCTTCCTTTTTTTCTGTAAGAATCTCCAGACAAAAAt                                                                                                     >  1:1365101/1‑151 (MQ=255)
                                                    tatTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCCTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTc                                                                                                 >  1:318942/1‑151 (MQ=255)
                                                       tGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAg                                                                                              <  1:2485547/151‑1 (MQ=255)
                                                       tGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGGATTATGCTT‑CCCTCTTCCTTTTTTTTTGTAAGAATCTCCAGACAAAAAAGCTcccg                                                                                              >  1:933021/1‑149 (MQ=255)
                                                           aaTGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCg                                                                                          <  1:2905194/151‑1 (MQ=255)
                                                           aaTGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCg                                                                                          <  1:381165/151‑1 (MQ=255)
                                                             tGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGtt                                                                                        <  1:1607224/151‑1 (MQ=255)
                                                             tGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGtt                                                                                        <  1:2672604/151‑1 (MQ=255)
                                                             tGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGtt                                                                                        <  1:2009904/151‑1 (MQ=255)
                                                               gTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTaa                                                                                      <  1:992001/151‑1 (MQ=255)
                                                                tctcCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGGGATATGCTTTCCGT‑TTCCTTTCTTTTTGTTAGAAATTCCAAGCAAAAAAGCTCCACGGCGTTaaa                                                                                     >  1:2307916/1‑151 (MQ=255)
                                                                 ctcCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTTTGGAAGGGATTATTCTT‑TCGTCTTCCTTTTTTTCTGTAAGAATCTCCCGACAAAAAAGCTCCAGGGCGTTaaaa                                                                                    >  1:2774575/1‑151 (MQ=255)
                                                                 ctcCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGGATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAAAGCTCCCGGGCGTTaaaa                                                                                    >  1:775684/1‑151 (MQ=255)
                                                                  tcCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAAt                                                                                   <  1:1752357/151‑1 (MQ=255)
                                                                  tcCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAAt                                                                                   <  1:2157918/151‑1 (MQ=255)
                                                                   ccTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATc                                                                                  <  1:2773597/151‑1 (MQ=255)
                                                                    cTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGGATTATGCTT‑CCGGCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGGCGTTaaaaaac                                                                                 >  1:2815401/1‑148 (MQ=255)
                                                                     tGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCAGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCa                                                                                <  1:3173121/151‑1 (MQ=255)
                                                                      gCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCAc                                                                               <  1:2736433/151‑1 (MQ=255)
                                                                          cAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACa                                                                           <  1:2710360/151‑1 (MQ=255)
                                                                          cAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACa                                                                           <  1:3440390/151‑1 (MQ=255)
                                                                           aGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAg                                                                          <  1:2909117/151‑1 (MQ=255)
                                                                             aTTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGAt                                                                        <  1:2166156/151‑1 (MQ=255)
                                                                               tGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGAttt                                                                      <  1:1280569/151‑1 (MQ=255)
                                                                               tGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGAttt                                                                      <  1:2448716/151‑1 (MQ=255)
                                                                               tGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGAttt                                                                      <  1:1083863/151‑1 (MQ=255)
                                                                                gCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTg                                                                     <  1:2134916/151‑1 (MQ=255)
                                                                                    tCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGt                                                                 <  1:2850783/151‑1 (MQ=255)
                                                                                     ccTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGtt                                                                <  1:2617816/151‑1 (MQ=255)
                                                                                      cTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGttt                                                               <  1:1080553/151‑1 (MQ=255)
                                                                                       tGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGGATTATGCTT‑CCGTCTTCCTTTCTTTTTGTAAGAATCTCCAGACAAAAAAGCTCCCGGTCGTTTAAATCCCCTACAGATTTTCGGgttt                                                              >  1:1688485/1‑151 (MQ=255)
                                                                                        ggTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGttttt                                                             <  1:2675202/151‑1 (MQ=255)
                                                                                          tACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGGAGGGATTATGCTT‑CCGTCTTCCTTTTTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTTAAAACCACTACAGATTTGCGGttttttt                                                           >  1:3202162/1‑149 (MQ=255)
                                                                                            cTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTttttcttt                                                         <  1:3087997/151‑1 (MQ=255)
                                                                                            cTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTttttcttt                                                         <  1:2047331/151‑1 (MQ=255)
                                                                                            cTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTttttcttt                                                         <  1:396899/151‑1 (MQ=255)
                                                                                              cGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGGAGGGATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCCGACAAAAAAGCTCCCGGTCGTTAAAATCCACTACAGATTTTCGGGttttcttttt                                                       >  1:3152801/1‑150 (MQ=255)
                                                                                                 ccaccaAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGGAGGGATTTTTCTT‑CCGTCTTCCCTTCTTTTTGTAAGAATTTTCAGACAAAAAAGCTCCAGGGCGTTAAAATTCACTACAGATTTGTGGGTTTTTTTTTcccc                                                    >  1:3153599/1‑149 (MQ=255)
                                                                                                 ccaccaAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGc                                                    <  1:712353/151‑1 (MQ=255)
                                                                                                     caAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGGATTATGCTT‑CCCTCTTCCTTTTTTTTTGTAAGAATCTCCAGACAAAAATGCTCCCGGGCGTTTAAATTCACTACAGATTTGCGGTTTTTTTTTTTCGCCTAc                                                >  1:801153/1‑151 (MQ=255)
                                                                                                      aaaaTCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACt                                               <  1:2476715/151‑1 (MQ=255)
                                                                                                         aTCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGGAGGGATTATGCTT‑CCCTCTTTCTTTCTTTTTGTAAGAATATCCAGACAAAAAAGCTCCCGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCCTACtttt                                            >  1:118355/1‑151 (MQ=255)
                                                                                                           ctcCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTcc                                          <  1:1127744/151‑1 (MQ=255)
                                                                                                                cAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAg                                     <  1:3056401/151‑1 (MQ=255)
                                                                                                                 aaaCCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAgc                                    <  1:593960/151‑1 (MQ=255)
                                                                                                                 aaaCCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAgc                                    <  1:612662/151‑1 (MQ=255)
                                                                                                                 aaaCCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGGATTATGCTT‑CCGTCTTCCTTTCTTTTTGTAAGAATCTCCCGACAAAAATGCTCCCGGTCGTTTAAATCCACTACAGATTTGCGGTTTTTTTTTTCCGCATACTTTTTCCCAAgc                                    >  1:1974983/1‑151 (MQ=255)
                                                                                                                 aaaCCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGGATTATGCTT‑CCCTCCTCCTTTTTTTCTGTAAGAATCTCCAGACAAAAATGCTCCCGGCCGTTAAAATCCACTACAGATTTGCGGGTTTTCTTTTCCGCATACTTTTCCCCaaac                                    >  1:1846439/1‑149 (MQ=255)
                                                                                                                  aaCCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGGATTATGCCT‑CCCTCCTCCTTTTTTTTTGTAAGAATCTCCAGACAAAAATGCCCCAGGTCGTTTAAATTCCCTACAGGTTTGCGGGTTTTTTTTTTCGCCTTCtttttcccaaacc                                   >  1:48824/1‑142 (MQ=255)
                                                                                                                      gTTCCCTGTATGAAATGGCGGTTCTGGAAGGGATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTTCGCATACTTTTCCGCAAGCTGCtt                               >  1:89485/1‑151 (MQ=255)
                                                                                                                       ttCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCttt                              <  1:2886711/151‑1 (MQ=255)
                                                                                                                       ttCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCttt                              <  1:2048169/151‑1 (MQ=255)
                                                                                                                          ccTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCTTTAcc                           <  1:818620/151‑1 (MQ=255)
                                                                                                                               aTGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCTTTACCAAGtt                      <  1:212616/151‑1 (MQ=255)
                                                                                                                               aTGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCTTTACCAAGtt                      <  1:2318729/151‑1 (MQ=255)
                                                                                                                                tGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCTTTACCAAGttt                     <  1:832399/151‑1 (MQ=255)
                                                                                                                                     tGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCTTTACCAAGTTTGCCAg                <  1:1758094/151‑1 (MQ=255)
                                                                                                                                     tGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCTTTACCAAGTTTGCCAg                >  1:1439222/1‑151 (MQ=255)
                                                                                                                                        cGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCTTTACCAAGTTTGCCAGGca             <  1:3153833/151‑1 (MQ=255)
                                                                                                                                            tCTGGAAGGAATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCTTTACCAAGTTTGCCAGGcttttc         >  1:3290955/1‑151 (MQ=255)
                                                                                                                                              tGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCTTTACCAAGTTTGCCAGGcatttcat       <  1:1199260/151‑1 (MQ=255)
                                                                                                                                                  aGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCTTTACCAAGTTTGCCAGGCATTTCAttttt   >  1:1341326/1‑151 (MQ=255)
                                                                                                                                                  aGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCTTTACCAAGTTTGCCAGGCATTTCAttttt   <  1:344301/151‑1 (MQ=255)
                                                                                                                                                   ggTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCTTTACCAAGTTTGCCAGGCATTTCATTTTTg  <  1:703582/151‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
ACATCTCCCACCATAAATACACCGGGACTTGCGTCATCCCCTTTGGATATCATATTGATAATGGTCTCCTGCACCAGATTGCTGTCCTGGTACTCGTCCACCAAAATCTCCGCAAACCGTTCCCTGTATGAAATGGCGGTTCTGGAAGGTATTATGCTT‑CCGTCTTCCTTTCTTTCTGTAAGAATCTCCAGACAAAAATGCTCCAGGTCGTTAAAATCCACTACAGATTTGCGGTTTTTCTTTTCCGCATACTTTTCCGCAAGCTGCTTTACCAAGTTTGCCAGGCATTTCATTTTTG  >  CP002416/3168721‑3169018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑