| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP002416 | 2,884,333 | 0 | G | T | 35.7% | 71.4 / 12.2 | 54 | L22F (TTG→TTT) | Clo1313_2469 | Prephenate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base G (15/12); new base T (13/2); total (28/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.93e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCCCAACAACTTCCGCCGGAAGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGT > CP002416/2884183‑2884477 | gCCCAACAACTTCCGCCGGAAGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTg < 1:278468/151‑1 (MQ=255)gCCCAACAACTTCCGCCGGAAGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTg < 1:211189/151‑1 (MQ=255) ccAACAACTTCCGCCGGAAGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑GCTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTgaa < 1:833975/151‑1 (MQ=255) caacaaCTTCCGCCGGAAGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTgaaa < 1:1576600/151‑1 (MQ=255) acaacTTCCGCCGGAAGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTgaaaga < 1:1359930/151‑1 (MQ=255) aacTTCCGCCGGAAGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTgaaagaaa < 1:94655/151‑1 (MQ=255) cTTCCGCCGGAAGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTGAAAGAAAA‑g < 1:1197705/151‑1 (MQ=255) ttCCGCCGGAAGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑c < 1:2210583/151‑1 (MQ=255) tCCGCCGGAAGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGGCGCTGGCG‑GAA‑GCTTTGAAAGaaaaact > 1:2056321/1‑148 (MQ=255) cgccgGAAGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTGGCTGGGG‑GAA‑GCATTGTAAGAAAA‑gactg > 1:1677894/1‑147 (MQ=255) cgccgGAAGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTg < 1:1558766/151‑1 (MQ=255) ccgGAAGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGGGGCTGGGG‑AAA‑GCTTTGTAAGaaaaagttggg > 1:3209080/1‑144 (MQ=255) cgGAAGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑Ca < 1:1042124/151‑1 (MQ=255) aaGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTg < 1:325310/151‑1 (MQ=255) aGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGGGGCTGGCG‑AAA‑GCTTTTTAAGAAAA‑gaatggccttgt > 1:1058574/1‑140 (MQ=255) ttCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGGTGGGG‑GAA‑GCATTTAAAGAAAA‑A‑CTTGG‑GATTG‑AGtga > 1:3023639/1‑149 (MQ=255) tCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGGGGCCGGCG‑GAA‑GCTTTTTAAGAAAA‑A‑CTTGG‑GATTgtgtgca > 1:2281156/1‑145 (MQ=255) tCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGGCGCTGGCG‑GAA‑GATTTTAAAGAAAA‑A‑ATTGG‑GATTG‑AGGCaa > 1:2187614/1‑151 (MQ=255) tgtgAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTTGCTGGCG‑GAA‑GCCTTTTAAGAAAA‑A‑ATTGG‑CCTTG‑TGTCAATa > 1:1890588/1‑151 (MQ=255) tgtgAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATa < 1:3317480/151‑1 (MQ=255) gtgAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATaa < 1:974049/151‑1 (MQ=255) gtgAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGGGGCTGGGG‑AAA‑GGTTTGAAAGAAAA‑A‑GTTGG‑Caattggtctataa > 1:2935493/1‑139 (MQ=255) gtgAACTGTATAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATaa < 1:982651/151‑1 (MQ=255) tgAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑GAA‑GATTTTAAAAAAAA‑A‑CTTGG‑CGTTG‑Aggtactaaa > 1:1976571/1‑143 (MQ=255) gAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAAcc < 1:1003954/151‑1 (MQ=255) aaCTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGGCGCTGGGG‑GAA‑ACTTTTAAAAAAAA‑A‑CTTTG‑CATTG‑TGTCAAAAAccg > 1:3003751/1‑151 (MQ=255) gtAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGGG‑GAA‑GCTTTTTAAGAAAA‑A‑CCTGG‑GATTG‑AGTCAATAACCGCCGTTg > 1:158041/1‑151 (MQ=255) aGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGGG‑GAA‑GCTTTTTAAGAAAA‑G‑ACTGG‑CATTG‑GGTGAATaaacccccttggcaa > 1:1846839/1‑138 (MQ=255) ataAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGGGGCCGGCG‑AAA‑ACTTTTAAAGAAAA‑A‑CCTGG‑GCTTG‑AGTCAATAAACGCCGGTGACATCAAt > 1:3010790/1‑151 (MQ=255) ttGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGGCGCTGGCG‑GAA‑GCTTTTAAAGAAAA‑G‑CTTGG‑GATTG‑AGTCAATAAACGCCGGTGACATCAATGAGAAAAgac > 1:2704807/1‑149 (MQ=255) caaaaTATTAGGAG‑GAGATTTTCCTTATGCAGGTAAAAAAAATATCATTTTTCGGGTTTGG‑ACTTACGGGGGGGTCGCGGGCG‑AAA‑GCTTTAAAAAAAAA‑G‑CTTGG‑CTTTG‑ATTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAg < 1:2708179/149‑1 (MQ=255) aaaaTATTAGAAA‑GAGATTTTCACTATGCGGGTTAAAAAAATATCCATTATCGGGCTGGG‑ACTTATCGGCGGGTCGTGGGAG‑AAA‑GTTTTAAAAAAAAA‑G‑CT‑GG‑GATTGGAGTAAAAAACCGCCGTTGACATCAATGAGAAAAGTCTGAGc < 1:2847523/150‑1 (MQ=255) aaaTATAAGGAA‑GAGATTTTCCCTATGCAGGTTAAAAAGATATCCATTAGGGGGTTTGG‑ATTTATGGGGGGGTCGCGGGCG‑AAA‑GTTTTAAAAAAAAA‑G‑TTGGG‑CATTG‑AGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGcc < 1:3008570/151‑1 (MQ=255) aaatttAGGAAAGAGAGTTTCACTAGGAAGGTAAAAAAAATCTCCATTATCGGGTTGGG‑TTTTATGGGGGGGTCGCGGGCG‑AAA‑GTTTAAAAAAAAAA‑G‑TTGGG‑CTTTG‑ATTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGcc < 1:1590349/147‑1 (MQ=255) atatTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGCCGCTGGCG‑GAA‑GCTTTTAAAGAAAA‑A‑ACTGG‑GATTG‑AGTCAATAAACCCCCCTGGCATCAAAGAGAAAAATCTGAGcccg > 1:261897/1‑149 (MQ=255) atatTAGAAA‑GAGATTTCCACTATGGGGGTAAAAAAGATATCCATTAGGGGGTTGGG‑ATTTACCGGGGGGTCGCGGGCA‑AAA‑GCTTT‑AAAAAAAA‑G‑GTTGGGCTTTG‑AGTAAAAAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAg < 1:1677893/151‑1 (MQ=255) tatTAGGAA‑GGGAGTTCCACTATGCAGTTTAAAAAGATATCCATTAGGGGGCTGGG‑CTTTATGGGGGGGTCGCGGGC‑‑AAA‑GTTTTTAAAAAAAA‑GGCTTGG‑CTTTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAgg < 1:219622/151‑1 (MQ=255) ttAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTGGCCGGCG‑GAA‑GCCTTTAAAGAAAA‑A‑CTTGG‑CGTTG‑AGGCAATAAACCCCGCTGTCATCAAAGAGGAAAATCTGGGGCAGGcc > 1:2515669/1‑150 (MQ=255) tAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCGTTTTAAGAAAA‑A‑CTTTG‑GGTTG‑TGTCAAAAAACACCGTTGACATCCAAGAGAAAAAACTGAGcccagccc > 1:3151395/1‑145 (MQ=255) ggAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCtt > 1:2504272/1‑151 (MQ=255) gagatTTTCACTATGCGGGTTAAAAAAATCTCCATTATCGGGTTTGG‑TTTTACCGGGGGGTCGGTGGCG‑AAA‑GTTTTAAAAAAAAA‑G‑CTTGC‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAag < 1:3436748/151‑1 (MQ=255) agttttacACTATGCAGTTTGAAAAGATACCCTTTA‑CGGGGTTGGCATTTATGGGGGGGCCGCTGG‑G‑AAATGCTTTGAAAAAAAA‑G‑TTTGC‑CATAG‑ATTAAATATCCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAaga < 1:1290050/144‑1 (MQ=255) aCTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑GAA‑GCTTTTTAAAAAAA‑A‑CTTTG‑CCTTG‑AGTCAATAAACCCCCTTGACATCAATGAGAAAAATCTTTGCCAGGCCCTTTAAAAGGG‑gtttt > 1:1134708/1‑150 (MQ=255) cTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGGCGCTGGCG‑GAA‑GCTTTTGAAGAAAA‑A‑ATTGG‑GATTG‑AGTCAATAAACGCCCGTGACATCAATGAGAAAAGAATGAGCCAGGGTCCTAAAGAGGG‑gttttt > 1:2213754/1‑149 (MQ=255) tATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑GAA‑GCTTTTAAAGAAAA‑A‑CTTGG‑CATTG‑AGTCAATAAACGCCGGTGACATCAATGAGAAAAAGATGAGCCAGGCGCTTTAAGAGGG‑GTTtata > 1:2399049/1‑151 (MQ=255) gaGGTTAAAAAGATATCCATTCGCGGGCTTGG‑CCTTATGGGGGGGTCGGGGGCA‑AAA‑G‑TTTTAAAAAAAA‑G‑GCTGG‑GATTGGAGTAAAAAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAaag < 1:1717557/150‑1 (MQ=255) cAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTTAAAGAAAA‑A‑CTTGG‑CATTG‑AGGCCATAAACCCCGTTGACATCAATGAGAAAAAGCTGAGCCAGGCGCTTAAAGAGGG‑GTTTATaaaaa > 1:395432/1‑150 (MQ=255) gTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGGCGCCGGCG‑AAA‑GCTTTTTAAGAAAA‑A‑ATTTG‑GATTT‑AGTGAATAAACGCCGGTGACATCAATGAGAAAAGACTGCGCCAGGCGCTTTAAAAGGG‑GGTTTTAAaagaag > 1:251946/1‑151 (MQ=255) aaaaGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGGCGCCGGCG‑GAA‑GCTTTGGAAAAAAA‑A‑ATTGG‑CATTT‑AGTCAATAAACGCCCTTTACATTAATAAGAAAAGACTGAGCCAGGCGCCTTAAGAGGG‑TTTTATAAAAAAAgggtt > 1:974784/1‑148 (MQ=255) aaaaGATATCCATTAGCGGGCTTGG‑ATTTAGCGGCGGGTCGCGGGCG‑AAA‑GTTTTAAAAAAAAA‑G‑CTTGG‑CATTG‑AGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGttt < 1:2659385/151‑1 (MQ=255) aGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGGCGCTGGCG‑AAA‑ACTTTTAAAGAAAA‑A‑CTTGG‑GATTG‑AGGCAATAAACGCCGTTGACATCAATGAGAAAAAGCTTAGCCAGGGTCTTAAAGAGGG‑GTTTATAAAAAAAGGGTTTaa > 1:842270/1‑150 (MQ=255) tCCATTATGGGGCTTGG‑ACTTAGCGGGGGGCCGCGGGCG‑AAA‑GTTTTGAAAAAAAA‑G‑CTTGG‑CATTG‑AGTAAAAAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAAc < 1:94783/151‑1 (MQ=255) ccatgagggggtttGG‑ATTTAGCGGGGGGTCGCGGGCA‑AAA‑GTTTAAAAAAAAAA‑G‑CTTGG‑CATGG‑AGAAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACt < 1:1846825/139‑1 (MQ=255) aTTATCGGGCTTGG‑ACTTATCGGCGGGGCGCTGGCG‑AAA‑GCTTTTAAAGAAAA‑A‑AATGG‑CGTTG‑AGTCAATAAACGCCGCTGACATCAAAGAGAAAAGACTGAGCCCGGCTCTTTAAGAGGG‑GTTTTTAAAAAAAGGGTTTACCGAACTTa > 1:2545096/1‑151 (MQ=255) tatggggCTGGG‑ACTTATCGGGGGGTCGCTGGCG‑AAA‑GTTTTAAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAAc < 1:620645/147‑1 (MQ=255) aTCGGGCTTGG‑ACTTATCGGCGGGGCGCTGGGGGAAA‑ATTTTGAA‑GAAAA‑A‑ATTTG‑GATTG‑AGGTAATAAACCCCGGTGACAACAATGAGAAAAAACTGAGGCAGGGTCTTTAAGAGGGGTTTTTAAAAAAAAGGTTTTAC‑GAACTTaaag > 1:2585133/1‑149 (MQ=255) ggtcttctCGGCGGGTCTCTGGCA‑AAA‑GCTTTAAAAGAAAA‑G‑TTTGG‑CATTG‑AGTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGtat < 1:995688/144‑1 (MQ=255) gggcgggccgggggCG‑AAA‑G‑TTTGAAAAAAAAAG‑CTTGG‑CTTTG‑ATTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCt < 1:2888839/139‑1 (MQ=255) cggggggTCGCGGGAG‑AAA‑GCTTAAAAAAAAAT‑G‑CTTGG‑ATTTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCt < 1:364914/147‑1 (MQ=255) cggcggGTCGCTGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCt > 1:1577658/1‑151 (MQ=255) gtcgggggcaaaa‑GTTTTAAAAAAAAA‑G‑CTTGG‑CATGG‑ATTAAAAAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACatt < 1:3209079/141‑1 (MQ=255) cGCTGGCG‑AAA‑GCTTTAAAAAAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACattat < 1:883938/151‑1 (MQ=255) gCTGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACattatt > 1:331718/1‑151 (MQ=255) cTGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTAttt > 1:3323226/1‑151 (MQ=255) cTGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTAttt > 1:2401475/1‑151 (MQ=255) tGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTAtttt > 1:3078107/1‑151 (MQ=255) cG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCat > 1:2872754/1‑151 (MQ=255) g‑AAA‑GGTTTAAAAAAAAA‑T‑CTTGG‑TTTTG‑ATTAAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCata < 1:1353383/151‑1 (MQ=255) g‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCata > 1:2103825/1‑151 (MQ=255) aaa‑GCTTTGAAAGAAAA‑G‑CTTTG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCatat > 1:2519581/1‑151 (MQ=255) aaa‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCatat > 1:2980998/1‑151 (MQ=255) aa‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATg > 1:3400225/1‑151 (MQ=255) aa‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATg > 1:3406850/1‑151 (MQ=255) aa‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATg > 1:2748716/1‑151 (MQ=255) a‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGt > 1:797606/1‑151 (MQ=255) | GCCCAACAACTTCCGCCGGAAGATTTCTGTGAACTGTGTAAAGATATAAGTAAAATTGCCGAAATATTAGGAA‑GAGAGTTTCACTATGCAGGTTGAAAAGATATCCATTATCGGGCTTGG‑ACTTATCGGCGGGTCGCTGGCG‑AAA‑GCTTTGAAAGAAAA‑G‑CTTGG‑CATTG‑AGTCAATAACCGCCGTTGACATCAATGAGAAAAGTCTGAGCCAGGCTCTTAAAGAGGG‑TTTTATAAAAGAAGGTTTTACCGAACTTAACGAATCGGTATATAATTCTGACATTATTTTCATATGT > CP002416/2884183‑2884477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |