Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0024162,385,2090GA32.5% 212.5 / 51.5 123intergenic (‑81/‑282)Clo1313_2022/Clo1313_2023glycoside hydrolase family 16/transcriptional regulator, LacI family
Reads supporting (aligned to +/- strand):  ref base G (17/66);  new base A (40/0);  total (57/66)
Fisher's exact test for biased strand distribution p-value = 3.70e-19
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.54e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 124 total aligned reads displayed.

AAGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATAAAAAAGAATATCATTCTAAAT  >  CP002416/2385059‑2385357
                                                                                                                                                      |                                                                                                                                                        
aaGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAg                                                                                                                                                          <  1:2295762/151‑1 (MQ=255)
 aGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGc                                                                                                                                                         <  1:477303/151‑1 (MQ=255)
    aGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTcc                                                                                                                                                      <  1:351256/151‑1 (MQ=255)
     gCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCt                                                                                                                                                     <  1:1845240/151‑1 (MQ=255)
         caaTTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑aa                                                                                                                                                <  1:3424472/151‑1 (MQ=255)
         caaTTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑aa                                                                                                                                                <  1:1124036/151‑1 (MQ=255)
                    aaaaCCAAAAGCAAGGAAGCCATTAATTATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGa                                                                                                                                     <  1:2409024/151‑1 (MQ=255)
                     aaaCCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGaa                                                                                                                                    <  1:1815725/151‑1 (MQ=255)
                      aaCCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGaaa                                                                                                                                   <  1:3030034/151‑1 (MQ=255)
                        ccAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAGCAAAACTCCTGT‑AAAAAATCAaaaaaaaa                                                                                                                                 >  1:1473975/1‑149 (MQ=255)
                          aaaaGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAACAACTCAACAAAACTCCTGT‑AAAAAATCAAAGAAatata                                                                                                                               >  1:2404581/1‑151 (MQ=255)
                              gCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAAtatatata                                                                                                                           <  1:3331328/151‑1 (MQ=255)
                              gCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAACACTTCAGCAAAACTTCTGC‑AAAAAATCAAAGAAaaataaaaa                                                                                                                           >  1:1913411/1‑147 (MQ=255)
                                aaGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGCAAAAAATAACAAATTAAAAAAACTCCTGT‑AAAAAATCAAAGAAAAAAATATaaa                                                                                                                         >  1:13194/1‑151 (MQ=255)
                                 aGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAACACTTCAGCAAAACTCCTGT‑AAAAATTCAAAGAAATATATATaaaa                                                                                                                        >  1:2799139/1‑150 (MQ=255)
                                  ggAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACg                                                                                                                       <  1:1313294/151‑1 (MQ=255)
                                  ggAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACATCAGCAAAACTCCTCT‑AAAAAATTAAAAAAATATATATaaaag                                                                                                                       >  1:2487845/1‑149 (MQ=255)
                                     aGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGGAAAAATTAAAACTTCAGCAAAACTCCTGT‑AACAATTCAAAAAAAAATATATAAAAGTcc                                                                                                                    >  1:360534/1‑150 (MQ=255)
                                      gCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCaa                                                                                                                   <  1:2708987/151‑1 (MQ=255)
                                       ccATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCaaa                                                                                                                  <  1:2817853/151‑1 (MQ=255)
                                        cATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAGCAAAACTCCTGT‑AACAATTCAAAAAAATATATATAAACGTCaaaa                                                                                                                 >  1:2711901/1‑150 (MQ=255)
                                         aTTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑cc                                                                                                               <  1:1028590/151‑1 (MQ=255)
                                           taataaTGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAAAACTTCAGCAAAACACCTGG‑AAAAATTCAAAGAAATATATATaaaatacaaatccc                                                                                                              >  1:233925/1‑140 (MQ=255)
                                           taataaTGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAAAGTCAAA‑cccc                                                                                                             >  1:2580436/1‑150 (MQ=255)
                                            aataatGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAAAACTTCAGCAAAACCCCTGT‑AACAAATTAAAAAAAAATATATaaaacttaaaacccg                                                                                                             >  1:1755070/1‑139 (MQ=255)
                                              taatGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTa                                                                                                          <  1:1779727/151‑1 (MQ=255)
                                               aatGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTAt                                                                                                         <  1:106680/151‑1 (MQ=255)
                                                atGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTAtt                                                                                                        <  1:1913412/151‑1 (MQ=255)
                                                 tGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAACATATTTTTATACTTTAGCGGCGGTAAAAAATAACACTTCAACAAAACTCCTGT‑AAAAAATCAAAAAAATATATATAAAAGTCAAA‑ACCCGTAttt                                                                                                       >  1:2951238/1‑151 (MQ=255)
                                                  gAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCCGCAAAACTCCTGT‑AAAAATTCAAAAAAAAATATATAAACGTCAAA‑ACCCGTAtttt                                                                                                      >  1:31205/1‑151 (MQ=255)
                                                   aaaTTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTa                                                                                                     <  1:1228743/151‑1 (MQ=255)
                                                    aaTTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTaa                                                                                                    <  1:3442816/151‑1 (MQ=255)
                                                     aTTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAg                                                                                                   <  1:3243760/151‑1 (MQ=255)
                                                        aCCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCa                                                                                                <  1:907231/151‑1 (MQ=255)
                                                           cTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAGCAAAAATCCCGT‑AAAAATTCAAAAAAAAATATATAAACGTCAAA‑ACCCGTATTTTAAACCACTa                                                                                             >  1:2997055/1‑151 (MQ=255)
                                                            tatttttCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTaa                                                                                            <  1:403802/149‑1 (MQ=255)
                                                              tttttCATAAAAAATACCTCCCGTAAAATAAGATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAAATTCAACAAAAATCCCGT‑AAAAAATCAAAAAAAAATATATAAACGTCAAA‑ACCTGTATTTTAAACCACCAacg                                                                                          >  1:2899034/1‑150 (MQ=255)
                                                               ttttCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAaca‑c                                                                                        <  1:3039827/151‑1 (MQ=255)
                                                               ttttCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAaca‑c                                                                                        <  1:2579691/151‑1 (MQ=255)
                                                               ttttCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACGTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAaca‑c                                                                                        <  1:3170822/151‑1 (MQ=255)
                                                               ttttCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAGCAAAACTCCTGT‑AACAAATTAAAGAAAAATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAaca‑c                                                                                        >  1:1895176/1‑151 (MQ=255)
                                                                    aTAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAGCAAAACTCCTGT‑AACAAATCAAAGAAAAATATATAAAAGTCAAA‑ACCCGTATTTTAAACCACTAACA‑CGCG‑tt                                                                                  >  1:3412108/1‑151 (MQ=255)
                                                                      aaaaaaTACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTaa                                                                                <  1:2590016/151‑1 (MQ=255)
                                                                         aaaTACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAACACTTCAGCAAAACTCCTGT‑AAAAATTCAAAAAAAAATATATAAACGTCAAA‑CCCTGTATTTTTAGCCACTAACA‑CGCG‑GTAATTc                                                                             >  1:1520954/1‑151 (MQ=255)
                                                                         aaaTACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGATAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTc                                                                             <  1:903439/151‑1 (MQ=255)
                                                                          aaTACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCg                                                                            <  1:3454308/151‑1 (MQ=255)
                                                                            tACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGAt                                                                          <  1:2458505/151‑1 (MQ=255)
                                                                             aCCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGAtt                                                                         <  1:1057463/151‑1 (MQ=255)
                                                                                    gTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAACAATTTAGCAAAACTCCTGT‑AAAAAATCAAAAAAAAATATATAAAAGTCAAA‑CCCTGTATTTTAAACCACTAACA‑CGCG‑TTAATTTGATTTtattat                                                                  >  1:1190751/1‑151 (MQ=255)
                                                                                     tAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATtata                                                                 <  1:398689/151‑1 (MQ=255)
                                                                                     tAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATtata                                                                 <  1:1804203/151‑1 (MQ=255)
                                                                                       aaaTAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACATCAACAAAAATCCTGT‑AAAAATTCAAAAAAATATATATAAAAGTCAAA‑ACCCGTATTTTTAAACACTAACA‑CGCG‑TTAATTTGATTTAATTatatt                                                               >  1:1329605/1‑150 (MQ=255)
                                                                                         ataataTAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCt                                                             <  1:787507/151‑1 (MQ=255)
                                                                                         ataataTAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAAAATCAGCAAAAATCCTTT‑TACAATTCAAAAAAAAATATATAAAAGTCAAA‑ACCCGTATTTTTAACCACTAAAA‑AGCG‑TTTATTCGATtttattttattct                                                             >  1:1223573/1‑148 (MQ=255)
                                                                                          taataTAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCta                                                            <  1:2545737/151‑1 (MQ=255)
                                                                                          taataTAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACATCAACAAAACTCCTCT‑TACAAATCAAAAAAAAATATATAAAAGTCAAA‑ACCCCTTTTTTTAGCCCCTAAAA‑CACG‑GTAATTTGATTTTATTATATCCtt                                                            >  1:2022091/1‑150 (MQ=255)
                                                                                            atatAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACGAACA‑CGCG‑TTAATTCGATTTAATTATATCCtata                                                          <  1:2869279/151‑1 (MQ=255)
                                                                                            atatAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAAAACTTCAGCAAAACCCCTGT‑AAAAATTCAAAAAAAAATATATAAAACTCAAA‑CCCCGTATTTTAAACCACTAACA‑CGCG‑TTAATTCGATTTTATTATATCCtata                                                          >  1:2826837/1‑151 (MQ=255)
                                                                                              ataaataaAATATATTTTTATACTTTAGCGGCGGTAAAAAATAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAAATCGATTTAATTATATCCTATaaa                                                        >  1:2014133/1‑151 (MQ=255)
                                                                                               taaataaaATATATTTTTATACTTTAGCGGCGGTAAAAATTAAAACTTTAGCAAAACTCCTGT‑AACAATTTAAAAAAATATATATAAACGTCAAA‑CCCCGTATTTTTAACCACTAAAA‑CGCG‑TTAATTCTATTTAATTATATACTATaaaa                                                       >  1:3180681/1‑150 (MQ=255)
                                                                                               taaataaaATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAAACTCAGCAAAAGTTCTGT‑AACAATTCAAAAAAAAATATATAAAAGTCAAA‑CCCTGTATTTTAAGGCACTAACA‑AGCG‑TTAATTCGATTTAATTATATACTATaaaa                                                       >  1:2195710/1‑150 (MQ=255)
                                                                                                  ataaaataTATTTTTATACTTTAGCGGCGGTAAAAAATAACACTTCAGCCAAACTCCTGT‑AACAATTTAAAAAAAAATATATAAACGTCCAA‑CCCTTTATTTTTAACCACTAAAA‑CGCG‑GTAATTCGATTTTATTTTATCCTATAAACttt                                                    >  1:428702/1‑150 (MQ=255)
                                                                                                  ataaaataTATTTTTATACTTTAGCGGCGGTAAAAAATAAAAATTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAAAGTCAAA‑CCCCGTATTTTTAACCACTAAAA‑AGCG‑CTAATTCGGTTTTATTATATTCTATAAACTTc                                                    >  1:730271/1‑151 (MQ=255)
                                                                                                  ataaaataTATTTTTATACTTTAGCGGCGGTAAAAAATAAAAAATAAACAAAACTCCTGT‑AAAAATTTAAAAAAATATATAAAAAAGGCAAAACCCT‑TATTTTAAACCACTAAAA‑CCCC‑TTTATTTGATTTAATTATAATCTATAAAATTc                                                    >  1:2050511/1‑151 (MQ=255)
                                                                                                   taaaataTATTTTTATACTTTAGCGGCGGTAAAAATTAAAACTTCAACAAAACTCCTGT‑TAAAATTCCAAGAAAAATATATAAACATCCAA‑ACCTGTATTTTAAACCACTAAAA‑CGCG‑TTTATTTGATTTAATTATATTCTATAAACTTct                                                   >  1:1945568/1‑150 (MQ=255)
                                                                                                      aataTATTTTTATACTTTAGCGGCGGTAAAAAATAACACTTCAACAAAACTCCTGT‑AACAATTCCAAGAAAAATATATAAAAGTCCAA‑ACCTGTATTTTAAGCCACCAACAACCGG‑TTAATT‑GTATTAATTATATCCTATAAAATTCaaat                                                >  1:3114262/1‑148 (MQ=255)
                                                                                                      aataTATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAGCAAAGCTCCTGTTAAAAATTCAAA‑AAAAATATATAAAAGTCAAA‑ACCCGTATTTTTAACCACCAACA‑CCCG‑TTAATTTGATTTTATTATATTCTTTAAACTTCCGAt                                                >  1:3337064/1‑151 (MQ=255)
                                                                                                        tatatTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAGCTTCAGATTg                                              <  1:3427086/151‑1 (MQ=255)
                                                                                                           atTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCa                                           <  1:1293080/151‑1 (MQ=255)
                                                                                                             ttttATACTTTAGCGGCGGTAAAAAATAAAAATTCAAGAAAACTCCTGT‑AACAAATCAAAGAAAAAAATATAAAAAGCAAA‑CCCTGGATTTTTAGGCACAAAAA‑CGCG‑GTAAATAGATTTAATTATATTCTATAAAATTCAGAtttttaaa                                         >  1:3223797/1‑145 (MQ=255)
                                                                                                              tttATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTTTTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACt                                        <  1:3319358/151‑1 (MQ=255)
                                                                                                              tttATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACt                                        <  1:2109496/151‑1 (MQ=255)
                                                                                                               ttATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTa                                       <  1:1852516/151‑1 (MQ=255)
                                                                                                               ttATACTTTAGCGGCGGTAAAAAATAACACTTCAGCAAAACTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCCGTATTTTAAACCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTa                                       >  1:1047629/1‑151 (MQ=255)
                                                                                                               ttATACTTTAGCGGCGGTAAAAAATAAAAAATCAACAAAACTCCCGT‑TAAAATTCAAAGAAAAATATATAAAAGACAAA‑ACCTCTATTTTAAACCACCAACA‑CACG‑GTAATTTAATTTAATTATATCCTATAAAACTCAGAATGTCaaata                                       >  1:1559075/1‑148 (MQ=255)
                                                                                                                 ataCTTTAGCGGCGGTAAAAAATAACACTTCAGCAAAACTCCTCT‑AAAAAATCAAAGAAAAATATATAAAAGTCAAA‑ACCCGTATTTTAAACCACTAAAA‑CGCG‑GTAATTCGATTTAATTATATTCTATAAAATTCAAATTTTTAACTaaa                                     >  1:165644/1‑151 (MQ=255)
                                                                                                                 ataCTTTAGCGGCGGTAAAAAATAAAACCTCAGCAAAACCCCTGT‑AACAATTCAAAGAAATATATATAAAACTCAAA‑ACCCGTTTTTTAAACCACCAACA‑CCCGGTTAATT‑TATTTAATTATTTCCTATAAACTTCAGGTTGTCAACTaaa                                     >  1:898246/1‑151 (MQ=255)
                                                                                                                  taCTTTAGCGGCGGTAAAAATTAACACTTCCGCCAAGCCCCTGT‑TAAAAATCAAAGAAAAATATATAAAAGTCAAA‑ACCCGTATTTTAAACCACTAACA‑CGCG‑GTAATTCGATTTTATTATATTCTATAAAATTCAGATTGTCAACTaaaa                                    >  1:910643/1‑151 (MQ=255)
                                                                                                                   aCTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAAc                                   <  1:328477/151‑1 (MQ=255)
                                                                                                                      ttAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCaa                                <  1:675110/151‑1 (MQ=255)
                                                                                                                          cggcggTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCt                            >  1:1607380/1‑151 (MQ=255)
                                                                                                                           ggcggTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTa                           >  1:3212313/1‑151 (MQ=255)
                                                                                                                           ggcggTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTa                           <  1:360535/151‑1 (MQ=255)
                                                                                                                           ggcggTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTa                           >  1:719349/1‑151 (MQ=255)
                                                                                                                            gcggTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAg                          <  1:3338528/151‑1 (MQ=255)
                                                                                                                               gTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATa                       >  1:1117353/1‑151 (MQ=255)
                                                                                                                                  aaaaTTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATaaaa                    <  1:3088905/151‑1 (MQ=255)
                                                                                                                                   aaaTTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATaaaaa                   <  1:1739068/151‑1 (MQ=255)
                                                                                                                                   aaaTTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATaaaaa                   >  1:1712939/1‑151 (MQ=255)
                                                                                                                                    aaTTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATaaaaaa                  >  1:1895953/1‑151 (MQ=255)
                                                                                                                                     aTTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGGCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATAAAAAAg                 <  1:1319264/151‑1 (MQ=255)
                                                                                                                                        aaCACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATAAAAAAGAat              <  1:763606/151‑1 (MQ=255)
                                                                                                                                          cacTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATAAAAAAGAatat            >  1:835905/1‑151 (MQ=255)
                                                                                                                                                 gCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATAAAAAAGAATATCATTCTa     <  1:660979/151‑1 (MQ=255)
                                                                                                                                                 gCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATAAAAAAGAATATCATTCTa     <  1:1311068/151‑1 (MQ=255)
                                                                                                                                                  cAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATAAAAAAGAATATCATTCTaa    <  1:353931/151‑1 (MQ=255)
                                                                                                                                                  cAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATAAAAAAGAATATCATTCTaa    >  1:787563/1‑151 (MQ=255)
                                                                                                                                                   aaaGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCGACTAACA‑CGCG‑TTAATTCGATTTAATTATAACCTATAAACTTCAGAGTGTCAACTAAAACCAAGTATAGATAAAAAAGAATATCATTCTaaa   >  1:2945649/1‑151 (MQ=255)
                                                                                                                                                    aaGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATAAAAAAGAATATCATTCTAAAt  >  1:1167081/1‑151 (MQ=255)
                                                                                                                                                    aaGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATAAAAAAGAATATCATTCTAAAt  <  1:1046904/151‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                        
AAGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACA‑CGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATAAAAAAGAATATCATTCTAAAT  >  CP002416/2385059‑2385357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑