Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0024162,385,1930TA35.0% 233.5 / 29.9 120intergenic (‑65/‑298)Clo1313_2022/Clo1313_2023glycoside hydrolase family 16/transcriptional regulator, LacI family
Reads supporting (aligned to +/- strand):  ref base T (15/63);  new base A (42/0);  total (57/63)
Fisher's exact test for biased strand distribution p-value = 5.25e-20
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 124 total aligned reads displayed.

CTTCCGCTTTGTAAAAAGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATAAAAAAG  >  CP002416/2385044‑2385342
                                                                                                                                                     |                                                                                                                                                        
cTTCCGCTTTGTAAAAAGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAtt                                                                                                                                                         <  1:1795193/151‑1 (MQ=255)
 ttCCGCTTTGTAAAAAGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTa                                                                                                                                                        <  1:79837/151‑1 (MQ=255)
 ttCCGCTTTGTAAAAAGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGCTAAAATTa                                                                                                                                                        >  1:2596593/1‑151 (MQ=255)
  tCCGCTTTGTAAAAAGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATaa                                                                                                                                                       >  1:81024/1‑151 (MQ=255)
    cGCTTTGTAAAAAGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATaaaa                                                                                                                                                     >  1:1406113/1‑149 (MQ=255)
      cTTTGTAAAAAGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAtaaataca                                                                                                                                                   >  1:1541452/1‑144 (MQ=255)
      cTTTGTAAAAAGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGATTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATaaaaaa                                                                                                                                                   >  1:1801653/1‑147 (MQ=255)
              aaaGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAACaaa                                                                                                                                           >  1:1777297/1‑151 (MQ=255)
               aaGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAg                                                                                                                                          <  1:2295762/151‑1 (MQ=255)
               aaGGACCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAACaaaa                                                                                                                                          >  1:1742255/1‑150 (MQ=255)
                aGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGc                                                                                                                                         <  1:477303/151‑1 (MQ=255)
                    gCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCt                                                                                                                                     <  1:1845240/151‑1 (MQ=255)
                        caaTTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑aa                                                                                                                                <  1:1124036/151‑1 (MQ=255)
                              ccGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTc                                                                                                                          <  1:133769/151‑1 (MQ=255)
                                    aaaCCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGaa                                                                                                                    <  1:1815725/151‑1 (MQ=255)
                                     aaCCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGaaa                                                                                                                   <  1:3030034/151‑1 (MQ=255)
                                       ccAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAGCAAAACTCCTGT‑AAAAAATCAaaaaaaaa                                                                                                                 >  1:1473975/1‑149 (MQ=255)
                                         aaaaGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAACAACTCAACAAAACTCCTGT‑AAAAAATCAAAGAAatata                                                                                                               >  1:2404581/1‑151 (MQ=255)
                                             gCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAAtatatata                                                                                                           <  1:3331328/151‑1 (MQ=255)
                                             gCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAACACTTCAGCAAAACTTCTGC‑AAAAAATCAAAGAAaaataaaaa                                                                                                           >  1:1913411/1‑147 (MQ=255)
                                              cAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAACACTTCCGCAAAAGTCCTGT‑AAAAATTCAAAAAAATATATATaa                                                                                                          >  1:237965/1‑151 (MQ=255)
                                              cAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAACACTTCAACAAAACTCCTGT‑AACAATTCAAAGAAAAataaataa                                                                                                          >  1:1610042/1‑151 (MQ=255)
                                                aGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAACACTTCAGCAAAACTCCTGT‑AAAAATTCAAAGAAATATATATaaaa                                                                                                        >  1:2799139/1‑150 (MQ=255)
                                                aGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAGCAAAACCCCTGT‑AACAAATCAAAAAAAAATATATaaaa                                                                                                        >  1:1311174/1‑150 (MQ=255)
                                                 ggAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACg                                                                                                       <  1:1313294/151‑1 (MQ=255)
                                                 ggAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACATCAGCAAAACTCCTCT‑AAAAAATTAAAAAAATATATATaaaag                                                                                                       >  1:2487845/1‑149 (MQ=255)
                                                    aGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGGAAAAATTAAAACTTCAGCAAAACTCCTGT‑AACAATTCAAAAAAAAATATATAAAAGTcc                                                                                                    >  1:360534/1‑150 (MQ=255)
                                                      ccATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCaaa                                                                                                  <  1:2817853/151‑1 (MQ=255)
                                                       cATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAGCAAAACTCCTGT‑AACAATTCAAAAAAATATATATAAACGTCaaaa                                                                                                 >  1:2711901/1‑150 (MQ=255)
                                                        aTTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑cc                                                                                               <  1:1028590/151‑1 (MQ=255)
                                                          taataaTGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCt                                                                                             <  1:3095832/151‑1 (MQ=255)
                                                          taataaTGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAAAACTTCAGCAAAACACCTGG‑AAAAATTCAAAGAAATATATATaaaatacaaatccc                                                                                              >  1:233925/1‑140 (MQ=255)
                                                          taataaTGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAAAGTCAAA‑cccc                                                                                             >  1:2580436/1‑150 (MQ=255)
                                                             taatGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTa                                                                                          <  1:1779727/151‑1 (MQ=255)
                                                              aatGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTAt                                                                                         <  1:106680/151‑1 (MQ=255)
                                                               atGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTAtt                                                                                        <  1:1913412/151‑1 (MQ=255)
                                                                tGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAACATATTTTTATACTTTAGCGGCGGTAAAAAATAACACTTCAACAAAACTCCTGT‑AAAAAATCAAAAAAATATATATAAAAGTCAAA‑ACCCGTAttt                                                                                       >  1:2951238/1‑151 (MQ=255)
                                                                 gAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCCGCAAAACTCCTGT‑AAAAATTCAAAAAAAAATATATAAACGTCAAA‑ACCCGTAtttt                                                                                      >  1:31205/1‑151 (MQ=255)
                                                                   aaTTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTaa                                                                                    <  1:3442816/151‑1 (MQ=255)
                                                                    aTTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAg                                                                                   <  1:3243760/151‑1 (MQ=255)
                                                                     ttACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGc                                                                                  <  1:2598437/151‑1 (MQ=255)
                                                                       aCCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCa                                                                                <  1:907231/151‑1 (MQ=255)
                                                                            gTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAAATTCAGCAAAACTCCTGT‑AAAAAATCAAAAAAAAATATATAAAAGTCAAA‑CCCTGTATTTTAAGACACTAac                                                                           >  1:3400445/1‑151 (MQ=255)
                                                                             tttttCATAAAAAATACCTCCCGTAAAATAAGATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAAATTCAACAAAAATCCCGT‑AAAAAATCAAAAAAAAATATATAAACGTCAAA‑ACCTGTATTTTAAACCACCAacg                                                                          >  1:2899034/1‑150 (MQ=255)
                                                                              ttttCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAacac                                                                         <  1:3039827/151‑1 (MQ=255)
                                                                              ttttCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAacac                                                                         <  1:2579691/151‑1 (MQ=255)
                                                                              ttttCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAacac                                                                         <  1:735613/151‑1 (MQ=255)
                                                                              ttttCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACGTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAacac                                                                         <  1:3170822/151‑1 (MQ=255)
                                                                              ttttCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAGCAAAACTCCTGT‑AACAAATTAAAGAAAAATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAacac                                                                         >  1:1895176/1‑151 (MQ=255)
                                                                               tttCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACAcg                                                                        <  1:1777296/151‑1 (MQ=255)
                                                                                   aTAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAGCAAAACTCCTGT‑AACAATTTAAAGAAATATATATAAACGTCAAA‑CCCCGTATTTTAAGCCACTAACACGCG‑tt                                                                   >  1:1212546/1‑151 (MQ=255)
                                                                                   aTAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAGCAAAACTCCTGT‑AACAAATCAAAGAAAAATATATAAAAGTCAAA‑ACCCGTATTTTAAACCACTAACACGCG‑tt                                                                   >  1:3412108/1‑151 (MQ=255)
                                                                                     aaaaaaTACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTaa                                                                 <  1:2590016/151‑1 (MQ=255)
                                                                                        aaaTACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGATAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTc                                                              <  1:903439/151‑1 (MQ=255)
                                                                                         aaTACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCg                                                             <  1:3454308/151‑1 (MQ=255)
                                                                                           tACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAGTTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGAt                                                           <  1:2532206/151‑1 (MQ=255)
                                                                                           tACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGAt                                                           <  1:2458505/151‑1 (MQ=255)
                                                                                            aCCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGAtt                                                          <  1:1057463/151‑1 (MQ=255)
                                                                                              cTCCCGTAAAAAAGTATAAATGAAATATATTTTTATACTTTAGCTGCAGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACACTTCAAAGAAATATATATAAACATCAAA‑CCCTGTATTATAAGCCACTACCTCGCG‑TTAATTAGAtata                                                        <  1:36626/151‑4 (MQ=255)
                                                                                                  cGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATta                                                    <  1:1079666/151‑1 (MQ=255)
                                                                                                   gTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAACAATTTAGCAAAACTCCTGT‑AAAAAATCAAAAAAAAATATATAAAAGTCAAA‑CCCTGTATTTTAAACCACTAACACGCG‑TTAATTTGATTTtattat                                                   >  1:1190751/1‑151 (MQ=255)
                                                                                                    tAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATtata                                                  <  1:398689/151‑1 (MQ=255)
                                                                                                      aaaTAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACATCAACAAAAATCCTGT‑AAAAATTCAAAAAAATATATATAAAAGTCAAA‑ACCCGTATTTTTAAACACTAACACGCG‑TTAATTTGATTTAATTatatt                                                >  1:1329605/1‑150 (MQ=255)
                                                                                                        ataataTAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCt                                              <  1:787507/151‑1 (MQ=255)
                                                                                                        ataataTAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAAAATCAGCAAAAATCCTTT‑TACAATTCAAAAAAAAATATATAAAAGTCAAA‑ACCCGTATTTTTAACCACTAAAAAGCG‑TTTATTCGATtttattttattct                                              >  1:1223573/1‑148 (MQ=255)
                                                                                                         taataTAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCta                                             <  1:2545737/151‑1 (MQ=255)
                                                                                                         taataTAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACATCAACAAAACTCCTCT‑TACAAATCAAAAAAAAATATATAAAAGTCAAA‑ACCCCTTTTTTTAGCCCCTAAAACACG‑GTAATTTGATTTTATTATATCCtt                                             >  1:2022091/1‑150 (MQ=255)
                                                                                                           atatAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACGAACACGCG‑TTAATTCGATTTAATTATATCCtata                                           <  1:2869279/151‑1 (MQ=255)
                                                                                                           atatAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAAAACTTCAGCAAAACCCCTGT‑AAAAATTCAAAAAAAAATATATAAAACTCAAA‑CCCCGTATTTTAAACCACTAACACGCG‑TTAATTCGATTTTATTATATCCtata                                           >  1:2826837/1‑151 (MQ=255)
                                                                                                           atatAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAAATAAAACATCAGCAAAACTCCTCT‑AAAAATTCCAAAAAATATATATAAAAATCAAA‑ACCCGTATTTTTAGCCACTAACACGCG‑TTAATTTGATTTTATTATATTCtata                                           >  1:3289895/1‑151 (MQ=255)
                                                                                                              taaataaaATATATTTTTATACTTTAGCGGCGGTAAAAATTAAAACTTTAGCAAAACTCCTGT‑AACAATTTAAAAAAATATATATAAACGTCAAA‑CCCCGTATTTTTAACCACTAAAACGCG‑TTAATTCTATTTAATTATATACTATaaaa                                        >  1:3180681/1‑150 (MQ=255)
                                                                                                                 ataaaataTATTTTTATACTTTAGCGGCGGTAAAAAATAACACTTCAGCCAAACTCCTGT‑AACAATTTAAAAAAAAATATATAAACGTCCAA‑CCCTTTATTTTTAACCACTAAAACGCG‑GTAATTCGATTTTATTTTATCCTATAAACttt                                     >  1:428702/1‑150 (MQ=255)
                                                                                                                 ataaaataTATTTTTATACTTTAGCGGCGGTAAAAAATAAAAAATAAACAAAACTCCTGT‑AAAAATTTAAAAAAATATATAAAAAAGGCAAAACCCT‑TATTTTAAACCACTAAAACCCC‑TTTATTTGATTTAATTATAATCTATAAAATTc                                     >  1:2050511/1‑151 (MQ=255)
                                                                                                                  taaaataTATTTTTATACTTTAGCGGCGGTAAAAATTAAAACTTCAACAAAACTCCTGT‑TAAAATTCCAAGAAAAATATATAAACATCCAA‑ACCTGTATTTTAAACCACTAAAACGCG‑TTTATTTGATTTAATTATATTCTATAAACTTct                                    >  1:1945568/1‑150 (MQ=255)
                                                                                                                     aataTATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGAt                                 <  1:2960714/151‑1 (MQ=255)
                                                                                                                     aataTATTTTTATACTTTAGCGGCGGTAAAAAATAAAACTTCAGCAAAGCTCCTGTTAAAAATTCAAA‑AAAAATATATAAAAGTCAAA‑ACCCGTATTTTTAACCACCAACACCCG‑TTAATTTGATTTTATTATATTCTTTAAACTTCCGAt                                 >  1:3337064/1‑151 (MQ=255)
                                                                                                                       tatatTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAGCTTCAGATTg                               <  1:3427086/151‑1 (MQ=255)
                                                                                                                          atTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCa                            <  1:1293080/151‑1 (MQ=255)
                                                                                                                            ttttATACTTTAGCGGCGGTAAAAAATAAAAATTCAAGAAAACTCCTGT‑AACAAATCAAAGAAAAAAATATAAAAAGCAAA‑CCCTGGATTTTTAGGCACAAAAACGCG‑GTAAATAGATTTAATTATATTCTATAAAATTCAGAtttttaaa                          >  1:3223797/1‑145 (MQ=255)
                                                                                                                             tttATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACt                         <  1:2109496/151‑1 (MQ=255)
                                                                                                                              ttATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTa                        <  1:1852516/151‑1 (MQ=255)
                                                                                                                              ttATACTTTAGCGGCGGTAAAAAATAACACTTCAGCAAAACTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCCGTATTTTAAACCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTa                        >  1:1047629/1‑151 (MQ=255)
                                                                                                                              ttATACTTTAGCGGCGGTAAAAAATAAAAAATCAACAAAACTCCCGT‑TAAAATTCAAAGAAAAATATATAAAAGACAAA‑ACCTCTATTTTAAACCACCAACACACG‑GTAATTTAATTTAATTATATCCTATAAAACTCAGAATGTCaaata                        >  1:1559075/1‑148 (MQ=255)
                                                                                                                                ataCTTTAGCGGCGGTAAAAAATAACACTTCAGCAAAACTCCTCT‑AAAAAATCAAAGAAAAATATATAAAAGTCAAA‑ACCCGTATTTTAAACCACTAAAACGCG‑GTAATTCGATTTAATTATATTCTATAAAATTCAAATTTTTAACTaaa                      >  1:165644/1‑151 (MQ=255)
                                                                                                                                ataCTTTAGCGGCGGTAAAAAATAAAACCTCAGCAAAACCCCTGT‑AACAATTCAAAGAAATATATATAAAACTCAAA‑ACCCGTTTTTTAAACCACCAACACCCGGTTAATT‑TATTTAATTATTTCCTATAAACTTCAGGTTGTCAACTaaa                      >  1:898246/1‑151 (MQ=255)
                                                                                                                                 taCTTTAGCGGCGGTAAAAATTAACACTTCCGCCAAGCCCCTGT‑TAAAAATCAAAGAAAAATATATAAAAGTCAAA‑ACCCGTATTTTAAACCACTAACACGCG‑GTAATTCGATTTTATTATATTCTATAAAATTCAGATTGTCAACTaaaa                     >  1:910643/1‑151 (MQ=255)
                                                                                                                                  aCTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAAc                    <  1:328477/151‑1 (MQ=255)
                                                                                                                                  aCTTTAGCGGCGGTAAAAAATAACAATTCAGCAAAGCTCCCGT‑AAAAATTCCAAGAAAAATATATAAACATCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTTAACTaaaaa                    >  1:194206/1‑150 (MQ=255)
                                                                                                                                     ttAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCaa                 <  1:675110/151‑1 (MQ=255)
                                                                                                                                         cggcggTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCt             >  1:1607380/1‑151 (MQ=255)
                                                                                                                                          ggcggTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTa            >  1:719349/1‑151 (MQ=255)
                                                                                                                                          ggcggTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTa            <  1:360535/151‑1 (MQ=255)
                                                                                                                                           gcggTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAg           <  1:3338528/151‑1 (MQ=255)
                                                                                                                                              gTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACGCGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATa        <  1:3188945/151‑1 (MQ=255)
                                                                                                                                                 aaaaTTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATaaaa     <  1:3088905/151‑1 (MQ=255)
                                                                                                                                                 aaaaTTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATaaaa     <  1:3480137/151‑1 (MQ=255)
                                                                                                                                                  aaaTTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATaaaaa    <  1:1739068/151‑1 (MQ=255)
                                                                                                                                                  aaaTTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATaaaaa    >  1:1712939/1‑151 (MQ=255)
                                                                                                                                                  aaaTTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATaaaaa    >  1:205352/1‑151 (MQ=255)
                                                                                                                                                    aTTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGGCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATAAAAAAg  <  1:1319264/151‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                        
CTTCCGCTTTGTAAAAAGGAGCAACAATTACCGACAAAACCAAAAGCAAGGAAGCCATTAATAATGAAATTACCCTGTTTTTCATAAAAAATACCTCCCGTAAAATAATATAAATAAAATATATTTTTATACTTTAGCGGCGGTAAAAATTAACACTTCAGCAAAGCTCCTGT‑AACAATTCAAAGAAATATATATAAACGTCAAA‑CCCTGTATTTTAAGCCACTAACACGCG‑TTAATTCGATTTAATTATATCCTATAAACTTCAGATTGTCAACTAAAACCAAGCCTAGATAAAAAAG  >  CP002416/2385044‑2385342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑