Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0024162,039,2390AC31.8% 235.8 / 23.4 110V247G (GTT→GGT) Clo1313_1746flagellar hook‑basal body protein
Reads supporting (aligned to +/- strand):  ref base A (66/9);  new base C (0/35);  total (66/44)
Fisher's exact test for biased strand distribution p-value = 1.14e-20
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 114 total aligned reads displayed.

CTTCACATTGATATTCTGGCTTCCAACGCTGCTGTCAGGTATAATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGATGCTGCGCTGCTGTAA  >  CP002416/2039091‑2039388
                                                                                                                                                       |                                                                                                                                                      
cTTCACATTGATATTCTGGCTTCCAACGCTGCTGTCAGGTATAATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑cc                                                                                                                                                     >  1:853100/1‑151 (MQ=255)
   cacaTTGATATTCTGGCTTCCAACGCTGCTGTCAGGTATAATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGc                                                                                                                                                  >  1:1090472/1‑151 (MQ=255)
    acaTTGATATTCTGGCTTCCAACGCTGCTGTCAGGTATAATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGAATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGcc                                                                                                                                                 <  1:1188596/151‑1 (MQ=255)
     caTTGATATTCTGGCTTCCAACGCTGCTGTCAGGTATAATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGcca                                                                                                                                                <  1:892041/151‑1 (MQ=255)
          atatTCTGGCTTCCAACGCTGCTGTCAGGTATAATTGTTATACTGGGTGTAACAGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGccatgtcc                                                                                                                                           >  1:1034933/1‑151 (MQ=255)
               cTGGCTTCCAACGCTGCTGTCAGGTATAATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCAtgtg                                                                                                                                      >  1:732553/1‑151 (MQ=255)
               cTGGCTTCCAACGCTGCTGTCAGGTATAATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCAtgtg                                                                                                                                      >  1:1141994/1‑151 (MQ=255)
                tGGCTTCCAACGCTGCTGTCAGGTATAATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTgg                                                                                                                                     >  1:1103714/1‑151 (MQ=255)
                       cAACGCTGCTGTCAGGTATAATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACAcc                                                                                                                              >  1:3366845/1‑151 (MQ=255)
                        aaCGCTGCTGTCAGGTATAATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCg                                                                                                                             >  1:1436622/1‑151 (MQ=255)
                        aaCGCTGCTGTCAGGTATAATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCg                                                                                                                             <  1:3113418/151‑1 (MQ=255)
                           gctgctGTCAGGTATAATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCt                                                                                                                          >  1:1503113/1‑151 (MQ=255)
                             tgctgTCAGGTATAATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGt                                                                                                                        >  1:2993032/1‑151 (MQ=255)
                                tgtaagttataTTTGTTATACTGGGTGTAACCGCGGAAC‑TTCAAATTCCCTGTCCCTGATCGCCAAACAGTATAGTTCCGGTAGCCCCCGAGGCTGTTCCCCC‑ATTCCCC‑GAACCAC‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAAc                                                                                                                     <  1:1982316/144‑1 (MQ=255)
                                 gTCAGGTATAATTATTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACg                                                                                                                    >  1:3049261/1‑151 (MQ=255)
                                  tCAGGTATAATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGt                                                                                                                   >  1:2620287/1‑151 (MQ=255)
                                   cagttataATTGTTATACTGGGTGTACCCGCGGAAC‑TTTCAATTCCCTGTCCCTGATCGTCAAACAGTAAAGTCCCGGTAGCCCCCGATGCTGTTCCCCC‑ATTCCCC‑GAATCAC‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTc                                                                                                                  <  1:2214938/147‑1 (MQ=255)
                                       tataTTTGTTATGCTGGTTGAACCCGCGAACC‑TTTCATTTCCCTGTCCCTGACCGTCAACCATAATATTTCCGGTACCCCCCAATCCT‑TTACCCCCTTTTCCC‑AAAACAA‑CCGGCCGTGTCCATGTGTTAACACCGCCTGTAACGTCGGtt                                                                                                              <  1:2550148/151‑1 (MQ=255)
                                        ttatttGTTATCCGGGGTGTACCCGCGGACC‑TTTCAATTCCCTGCCCCTGTCCGTCAAACAGTATAGTCCCGGTAGCCCCCGTTGCTTTTCCCCC‑ATTCCCC‑GAATCAC‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGttt                                                                                                             <  1:108348/147‑1 (MQ=255)
                                         tattttttATCCTGGGTGTACCCGGGGAAC‑TTTCAATTCCCTGTCCCTGATCGTCAAACAGTATAGTCCGGGTAGCCCCCGATGCTTTTCCCCC‑ATTTCCC‑GAATCAC‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGtttt                                                                                                            <  1:2725701/145‑1 (MQ=255)
                                         tatttGTTATACTGGGTGTACCCGCGGACT‑TTTCATTTCCCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTGGCTCCCGATGCTGTTCCCCC‑TTTCCCC‑GAATCAC‑CCTGCCATGTCCATGTGTTAACACCGCCTGTAACGTCGGtttt                                                                                                            <  1:249615/148‑1 (MQ=255)
                                         taATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGtttt                                                                                                            >  1:604983/1‑151 (MQ=255)
                                            tttttATCCTGGGTGTACCCG‑GGAACCTTTCATTTCCCTGCCCCTGTTCGCAAAACAGTATAGTCCCGGTAGCCCCCGATGCTGTTCCCCC‑TTTTCCC‑GATTCAC‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCa                                                                                                         <  1:3210532/148‑1 (MQ=255)
                                                tataCTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGaaa                                                                                                     >  1:2582297/1‑151 (MQ=255)
                                                 atccTGGGTGTACCCGCGGAAC‑TTTCAATTCCCTGCCCCGGCTCGACAAACAGTATAGTCCCGGTGGCCCCCGTTGCTGTCCCCCC‑TTTCCCC‑GAATCAC‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAAc                                                                                                    <  1:1565995/148‑1 (MQ=255)
                                                 ataCTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAAc                                                                                                    >  1:458680/1‑151 (MQ=255)
                                                      gggtttacccggggAAC‑TTTCATTTCCCTGTCCCTGTTCGACAAACATTATATTCCCGGTGGCCCCCGATGCTTTTCCCCC‑ATTCCCC‑AAATCAC‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTtata                                                                                               <  1:2801487/139‑1 (MQ=255)
                                                      gggTGTACCCGCGGACC‑TTTCAATTCCCTGCCCCTGTTCGTCAAACAGTATAGTCCGGGTAGCTCCCGATGCTGTTCCCCC‑TTTCCCC‑GAATCAC‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTtata                                                                                               <  1:3456198/151‑1 (MQ=255)
                                                      gggTGTACCCGCGGAAC‑TTCCATTTCCCTCCCCCTATTCGAAAAACAATATAGTTCCGATGGCTCCGGATGCTTTAACCCC‑ATTCCCC‑GAATCGC‑CCTACAATATCCTTGTGTTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTtata                                                                                               <  1:2741080/151‑1 (MQ=255)
                                                       ggTGTACCCGCGGAAT‑TTTCAATTCCCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGTTGCTGTTCCCCC‑ATTTCCC‑AAATCAC‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTatat                                                                                              <  1:3476954/151‑1 (MQ=255)
                                                       ggTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTatat                                                                                              >  1:1432321/1‑151 (MQ=255)
                                                          gtAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTAtattta                                                                                           >  1:1087165/1‑151 (MQ=255)
                                                           tacccgcgaacc‑TTTAAATTCCCTGCCCCTGATCGTCAACCAGTATAGTTCCGGTACCCCCCGTTGCTGTTCCCCC‑ATTCCCC‑GAATCAC‑CCTGCCATGTCCTTGTGGTACCACCGCCTGTAACGTCGGTTTTCCAGAAACTTAtatttat                                                                                          <  1:654124/140‑1 (MQ=255)
                                                           tacccGCGGAAC‑TTTAAATTCCCTGTCCCTGACCCTAAAACAGTATAGTCCCGGTGGCGCCCGAGGTTTTTCCCCT‑TTTTCCC‑AAAACAC‑CCTCCAATGTCCTTGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTAtatttat                                                                                          <  1:2932143/148‑1 (MQ=255)
                                                              ccGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTAtttt                                                                                       >  1:2793081/1‑151 (MQ=255)
                                                                 cgGATC‑TTTCATTTCCCTGTCCTTGATCGTAAACCATTATGGTCCCGGTAGCCCCCGTTGCTTTTCCCCC‑TTTCCCC‑GAACCAC‑CCTGCCATGTCCTTTTGTTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTa                                                                                    <  1:1115791/151‑1 (MQ=255)
                                                                 cgGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTa                                                                                    >  1:1343235/1‑151 (MQ=255)
                                                                    acc‑TTTCAATTCCCTGTCCCTGACCGTCAACCGGTATAGTCCGGGTCGCCCCCGTTGCTTTTCCCCC‑TTTCCCC‑GAACCAC‑CCTCCCATTTCTATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCt                                                                                 <  1:1966601/149‑1 (MQ=255)
                                                                    aaC‑TTTCAATTCCCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAC‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCt                                                                                 <  1:3424064/151‑1 (MQ=255)
                                                                     aC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTg                                                                                >  1:277517/1‑151 (MQ=255)
                                                                        tttCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGtt                                                                              >  1:1206208/1‑151 (MQ=255)
                                                                         ttCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATTTTTATTTTGTAGCTGttt                                                                             >  1:3399111/1‑151 (MQ=255)
                                                                           caattcccggccccTGATCGTAAAACAGTATAGTCCCGGTAGCCCCCGATGCTGTTCCCCC‑TTTCCCC‑GAATCAC‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTcc                                                                           <  1:2608035/140‑1 (MQ=255)
                                                                           cAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTcc                                                                           >  1:3356811/1‑151 (MQ=255)
                                                                           cAATTACCGGTCCCTGATCGTAAAACAATATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATC‑CCC‑AAAACAAACATGCCATTTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTcc                                                                           <  1:385100/151‑1 (MQ=255)
                                                                             attcccTGCCCCTGACCGTCAAAAAGTATAGTCCGGGTAGCCCCCGTTGCTGTT‑CCCC‑CTTTCCCAGAACCAC‑CCTGCCATGTCCAGGTGTTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCa                                                                         <  1:3260937/147‑1 (MQ=255)
                                                                             aTTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCa                                                                         >  1:2206354/1‑151 (MQ=255)
                                                                              ttcccTGTCCAAGATCGTAAAACATTATAGTCCCGGTAACTCCCAATGTTTTTACCCC‑ATTTCCC‑AAATCAC‑CCGGCCATGTCCTTGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCaa                                                                        <  1:1199036/148‑1 (MQ=255)
                                                                               tACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGCAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCaaa                                                                       >  1:2075381/1‑151 (MQ=255)
                                                                                  cTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGaa                                                                    >  1:1350654/1‑151 (MQ=255)
                                                                                   tGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGACACTTATATTTATTTTGTAGCTGTTTCCCAAAGAAt                                                                   >  1:243328/1‑151 (MQ=255)
                                                                                     tCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCa                                                                 >  1:2142465/1‑151 (MQ=255)
                                                                                      cccTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCat                                                                >  1:250490/1‑151 (MQ=255)
                                                                                       ccTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCata                                                               >  1:3308691/1‑151 (MQ=255)
                                                                                       ccTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCata                                                               >  1:3046431/1‑151 (MQ=255)
                                                                                       ccTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCata                                                               >  1:1090535/1‑151 (MQ=255)
                                                                                              gtaaaaCAGTATAGTCCCGGTAGCCCCCGATGTTTTTCCCCC‑TTTCCCC‑GAATCAC‑CCTCCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTa                                                        <  1:661569/148‑1 (MQ=255)
                                                                                              gTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTa                                                        >  1:1135990/1‑151 (MQ=255)
                                                                                                cAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAAc                                                      >  1:2134899/1‑151 (MQ=255)
                                                                                                cAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAAc                                                      >  1:1080915/1‑151 (MQ=255)
                                                                                                 aaaCAGTATAGTCCCGGTAGCCCCCGATGCTTTTCCCCC‑TTTCCCC‑GAATCAC‑CCTGCCATGTCAATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACa                                                     <  1:1347958/151‑1 (MQ=255)
                                                                                                     aGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCa                                                 >  1:2280244/1‑151 (MQ=255)
                                                                                                      gTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCAt                                                >  1:3188580/1‑151 (MQ=255)
                                                                                                       tataGTTCCGGTACCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATa                                               >  1:1034887/1‑151 (MQ=255)
                                                                                                       tataGTCCGGGTAGCTCCCGATGCTGTTCCCCC‑TTTTCCC‑GAACCAC‑CCTGCCATGTCCATGGGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATa                                               <  1:1287497/151‑1 (MQ=255)
                                                                                                       tataGTCCCGGTAGCTCCCGATGCTGTTCCCCC‑ATTTCCC‑GAATCAC‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATa                                               <  1:949340/151‑1 (MQ=255)
                                                                                                        atagtcccgtaagcccccGATGCTGTCCCCCC‑ATTCCCC‑GAATCAC‑CCCCCAATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAg                                              <  1:950271/136‑1 (MQ=255)
                                                                                                         taGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGt                                             >  1:1456174/1‑151 (MQ=255)
                                                                                                          atttCCGTTAGCCCCCGATGTTTTTCCCCC‑ATTCCCC‑GAACCAC‑CTTCCCTTGACGATGTGTTAACTCCGCCTGTAACCTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCACATACCGTAACAGGCATAGTg                                            <  1:1739075/149‑1 (MQ=255)
                                                                                                             cccgttgccccccGATGCTGTTCCCCC‑TTTCCCC‑AAACCAC‑CCTGCCTTGCCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAAt                                         <  1:1419606/141‑1 (MQ=255)
                                                                                                              ccGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATc                                        >  1:1534156/1‑151 (MQ=255)
                                                                                                                  tAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTAtt                                    >  1:940258/1‑151 (MQ=255)
                                                                                                                   ggcccccGATGTTGTTCCCCC‑ATTCCCC‑GAACCAC‑CCTGCCTTGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTAttg                                   <  1:3129987/147‑1 (MQ=255)
                                                                                                                    gCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTAttgt                                  >  1:1837309/1‑151 (MQ=255)
                                                                                                                     cccccGATGCTTTTCCCCC‑TTTTCCC‑AAACCAC‑CCTCCAATGTCCTTGTGTTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTAttgtt                                 <  1:2025354/149‑1 (MQ=255)
                                                                                                                      tCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTAttgttg                                >  1:2406777/1‑151 (MQ=255)
                                                                                                                      tCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTAttgttg                                >  1:843437/1‑151 (MQ=255)
                                                                                                                      tCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTAttgttg                                >  1:2271450/1‑151 (MQ=255)
                                                                                                                        ccGATGCTGTCCCCCC‑TTTCCCC‑GAATCAC‑CCTCCAATCTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCt                              <  1:2394322/151‑1 (MQ=255)
                                                                                                                         cGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTg                             >  1:2638774/1‑151 (MQ=255)
                                                                                                                          gATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTgg                            >  1:2361993/1‑151 (MQ=255)
                                                                                                                           aTGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGGTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGa                           >  1:2872373/1‑151 (MQ=255)
                                                                                                                              cTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGAtgt                        >  1:691154/1‑151 (MQ=255)
                                                                                                                               tGTTCCCCC‑ATTTCCC‑AAATCAC‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGAtgtg                       <  1:2776247/151‑1 (MQ=255)
                                                                                                                                 ttACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGcc                     >  1:674206/1‑151 (MQ=255)
                                                                                                                                    cccc‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGa                  >  1:2720379/1‑151 (MQ=255)
                                                                                                                                     ccc‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGTTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGAt                 <  1:881611/151‑1 (MQ=255)
                                                                                                                                       ccttttCCG‑GAATCAC‑CCGGCCATTTCCTTGTGTTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGAtg                <  1:3064778/148‑1 (MQ=255)
                                                                                                                                       c‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGAtgc               >  1:2378630/1‑151 (MQ=255)
                                                                                                                                       c‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGAtgc               >  1:1346757/1‑151 (MQ=255)
                                                                                                                                         ttttCCC‑AAATCAC‑CCTGCTATGTCCAGGTGGAAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGAtgct              <  1:3163474/150‑1 (MQ=255)
                                                                                                                                         aTTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGAtgct              <  1:3319300/151‑1 (MQ=255)
                                                                                                                                            tCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGATgctgcg           >  1:1164859/1‑151 (MQ=255)
                                                                                                                                            tCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGATgctgcg           >  1:1804961/1‑151 (MQ=255)
                                                                                                                                              cc‑GAATCAC‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGATgctgcgct         <  1:2242652/151‑1 (MQ=255)
                                                                                                                                               c‑GAACCAA‑CCTGCCTTGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGATgctgcgctg        <  1:3112528/151‑1 (MQ=255)
                                                                                                                                                caaaTCAC‑CCTGCAATGCCCATGGGGAAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGATgctgcgctg        <  1:3132517/149‑1 (MQ=255)
                                                                                                                                                   aTCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGATGCTGCGctgctg     >  1:3248951/1‑151 (MQ=255)
                                                                                                                                                   aTCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGATGCTGCGctgctg     <  1:1053843/151‑1 (MQ=255)
                                                                                                                                                      aa‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGATGCTGCGCTGCTGTaa  >  1:1311661/1‑151 (MQ=255)
                                                                                                                                                       |                                                                                                                                                      
CTTCACATTGATATTCTGGCTTCCAACGCTGCTGTCAGGTATAATTGTTATACTGGGTGTAACCGCGGAAC‑TTTCAATTACCTGTCCCTGATCGTCAAACAGTATAGTTCCGGTAGCTCCCGATGCTGTTACCCC‑ATTTCCC‑GAATCAA‑CCTGCCATGTCCATGTGGTAACACCGCCTGTAACGTCGGTTTTCCAGAAACTTATATTTATTTTGTAGCTGTTTCCCAAAGAATCATATACCGTAACAGGCATAGTGAATCTATTGTTGCTGGATGTGCCGGATGCTGCGCTGCTGTAA  >  CP002416/2039091‑2039388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑