Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0024161,877,6370GA34.5% 142.0 / 41.6 89E326K (GAA→AAA) Clo1313_1607translation initiation factor, aIF‑2BI family
Reads supporting (aligned to +/- strand):  ref base G (50/7);  new base A (0/30);  total (50/39)
Fisher's exact test for biased strand distribution p-value = 5.25e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

GAAACGGGAGAGCAAATTCCGATAGAAGAGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTTTATTATTCTTTTTATTCTTTTTTTGCCTGCT  >  CP002416/1877490‑1877786
                                                                                                                                                     |                                                                                                                                                        
gAAACGGGAGAGCAAATTCCGATAGAAGAGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGaaa                                                                                                                                                       >  1:829893/1‑151 (MQ=255)
  aaCGGGAGAGCAAATTCCGATAGAAGAGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGaaaaa                                                                                                                                                     >  1:121685/1‑151 (MQ=255)
   aCGGGAGAGCAAATTCCGATAGAAGAGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAg                                                                                                                                                    <  1:328036/151‑1 (MQ=255)
     gggAGAGCAAATTCCGATAGAAGAGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑t                                                                                                                                                 >  1:1107538/1‑151 (MQ=255)
        agagCAAATTCCGATAGAAGAGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑t‑att                                                                                                                                             <  1:3421341/151‑1 (MQ=255)
          agCAAATTCCGATAGAAGAGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑t‑att‑at                                                                                                                                          <  1:553191/151‑1 (MQ=255)
            cAAATTCCGATAGAAGAGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCt                                                                                                                                        >  1:2444125/1‑151 (MQ=255)
             aaaTTCCGATAGAAGAGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTa                                                                                                                                       <  1:1330834/151‑1 (MQ=255)
             aaaTTCCGATAGAAGAGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTa                                                                                                                                       >  1:2917162/1‑151 (MQ=255)
                ttCCGATAGAAGAGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTAccc                                                                                                                                    <  1:831585/151‑1 (MQ=255)
                 tCCGATAGAAGAGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCg                                                                                                                                   <  1:751355/151‑1 (MQ=255)
                    gATAGAAGAGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCAAAAAAGG‑T‑ATT‑ATCTACCCGCCa                                                                                                                                <  1:341555/151‑1 (MQ=255)
                     aTAGAAGAGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCat                                                                                                                               >  1:3229227/1‑151 (MQ=255)
                       agaagaGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCatat                                                                                                                             >  1:3410285/1‑151 (MQ=255)
                             gCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGaa                                                                                                                       >  1:2782922/1‑151 (MQ=255)
                              cGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGaaa                                                                                                                      >  1:45979/1‑151 (MQ=255)
                                aaGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAat                                                                                                                    >  1:218785/1‑151 (MQ=255)
                                   cccTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAAtata                                                                                                                 >  1:54090/1‑151 (MQ=255)
                                   cccTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAAtata                                                                                                                 >  1:1093871/1‑151 (MQ=255)
                                       gctgAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATaaaaa                                                                                                             >  1:2987283/1‑151 (MQ=255)
                                        ctaaaaTAACTCATATAAAAGGCATCAGAATTGCTCCCGAGGGTAAAAGGGTAAGGAATCCGGCCTTTG‑ACGTAACACAAAAAAAA‑TACATTTCAGAAATAATAACAAAAAAGGG‑T‑TTT‑ATCTACCCGCCATATGATGAAAATATaaaaaa                                                                                                            <  1:1377250/148‑1 (MQ=255)
                                          gAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGAAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATaaaaaaaa                                                                                                          >  1:606740/1‑150 (MQ=255)
                                          aaaaaaaCTCATATAAAAGGCATAAGAATTCCCCCCGAGGATATAAAGGAAAGGAATCCGGCTTTAG‑ACGAAACAC‑AAACAAAATAC‑TTTTAGGAAATAATACAAAAAAAGGGT‑ATT‑ATCTCCCCGCCATATGATGAAAATATAAAAAAAt                                                                                                          <  1:2241557/146‑1 (MQ=255)
                                             aTAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACa                                                                                                       >  1:1032081/1‑151 (MQ=255)
                                             aTAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACa                                                                                                       >  1:3403803/1‑151 (MQ=255)
                                               aaCTCATACCAAGGGCATCAGAATTCCCCCCGAAGGTGAAAAGGAAAGAAACCCGCCCTTTG‑ACGTAACACCAAACAAA‑TACATTACAAAAATAATAAC‑AAAAAAGG‑T‑TTTTATCTCCCCGCCATATGATGAAAATATAAAAAAATACAgg                                                                                                     <  1:746606/151‑1 (MQ=255)
                                                aCTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGt                                                                                                    >  1:439077/1‑151 (MQ=255)
                                                 cTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGta                                                                                                   >  1:2562354/1‑151 (MQ=255)
                                                 cTCATATAAAAGGCATCAAAATTGCCCCCGAAGGTGAAAAGGAAAGGAACCCGGCTTTTG‑ACGTAACCCCAAAAAAA‑TACATTTCAGAAATTATAACCAAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGta                                                                                                   <  1:833830/151‑1 (MQ=255)
                                                  acaaataaaaGGCATCAGAATTCCCCCCAAAGGTGTAAAGGTAAGGAATCCGGCTTTTA‑ACGTAACACAAAACAAA‑TACATTTCAACAATTATAACAAAAAAGGG‑T‑ATT‑ATCTCCCCGCCATATGATGAAAATATAAAAAAATACAGGtaa                                                                                                  <  1:1728935/144‑1 (MQ=255)
                                                    atatCAAAGGCATCAGATTTGCTCCCGAAGGTGAAAAGGTAAGAAACCCGGCCTTTG‑ACGTAACACCAAAAAAA‑TACATTTAAGAAATTAAAACCAAAAAAGG‑T‑ATT‑ATCTCCCCGCCATATGATGAAAATATAAAAAAATACAGGtaaat                                                                                                <  1:1332366/151‑1 (MQ=255)
                                                     tatCAAAGGAATCAGATTCGCCCCCGAGGGTGTAAAGGTAAGAAATCCGGCTTTTG‑ACATAACCCAAAAAAAA‑TACATTTCAGCAATTATAACCAAAAAAGA‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGtaaata                                                                                               <  1:1519480/151‑1 (MQ=255)
                                                     aatCAAAGGCAACAGAATTCCCCCCGAAGGTGAAAAGGAAAGAAATCCGGCCTTTG‑ACATAACACAAAACAAA‑TACATTACAAAAATTATAACAAAAAAAGT‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGtaaata                                                                                               <  1:2738728/150‑1 (MQ=255)
                                                      atCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGtaaataa                                                                                              >  1:1684352/1‑151 (MQ=255)
                                                      aaaaaaGGCAAAAGATTTGCTCCAGAAGGTGAAAGGGTAAGGAACCCGCCTTTTG‑ACGAAACACAAAACAAA‑TACATTACAGAAATTAAAACAAAAAAAGG‑T‑ATT‑ATCTCCCCGCCATATGATGAAAATATAAAAAAATACAGGtaaataa                                                                                              <  1:2955130/148‑1 (MQ=255)
                                                          aggacataaGAATTGCTCCAAAAGGTGAAAAGAAAAGGAACCCGGCTTTTG‑ACGAAACCCAAAAAAAA‑AACATTTCAAAAATTAAAACC‑AAAAAGG‑TTATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACtt                                                                                          <  1:1882649/143‑1 (MQ=255)
                                                          aaGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACtt                                                                                          >  1:2266453/1‑151 (MQ=255)
                                                           aGGCATCAAAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGAAATTATAACCAAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTc                                                                                         <  1:2793892/151‑1 (MQ=255)
                                                               aTCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCa                                                                                     >  1:2620690/1‑151 (MQ=255)
                                                                tCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCaa                                                                                    >  1:1930466/1‑151 (MQ=255)
                                                                 cAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCaaa                                                                                   >  1:1611696/1‑151 (MQ=255)
                                                                  aaaattccccccGAAGGTGAAAAGGTAAGGAACCCGGCCTTTG‑ACGAAACACAAAAAAAA‑TACATTTCAAAAATAAAAACAAAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCaaaa                                                                                  <  1:971429/142‑1 (MQ=255)
                                                                  aGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCaaaa                                                                                  >  1:1220089/1‑151 (MQ=255)
                                                                   gAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCaaaaa                                                                                 >  1:3237530/1‑151 (MQ=255)
                                                                     aTTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAAtt                                                                               >  1:764357/1‑151 (MQ=255)
                                                                     aTTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAAtt                                                                               >  1:1695789/1‑151 (MQ=255)
                                                                      ttccgcccGAGGGTGAAAAGGAAAGGAATCCGGCCTTTG‑ACATAACACAAAAAAAA‑TACATTTAAGAAATTATAACAAAAAAAGG‑T‑ATT‑ATCAACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAATCTTCCGCAAAAAttt                                                                              <  1:1667277/146‑1 (MQ=255)
                                                                        gcccccGAAGGTTAAAAGGTAAGGAACCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGAAATTAAAACCAAAAAAGG‑T‑ATT‑ATCTCCCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTaa                                                                            <  1:1939845/148‑1 (MQ=255)
                                                                         cccccGAAGGTATAAAGGTAAGGAA‑CCCGCCTTTGGACGAAACCCAAAAAAAA‑TACATTTCAGAATTTAAAACCAAAAAAGG‑T‑ATT‑ATCTCCCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTaaa                                                                           <  1:2196398/149‑1 (MQ=255)
                                                                          tCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTaaaa                                                                          >  1:496167/1‑151 (MQ=255)
                                                                           cccGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAg                                                                         >  1:1031320/1‑151 (MQ=255)
                                                                            ccGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑C‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGc                                                                        >  1:2822063/1‑151 (MQ=255)
                                                                                   tgtAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAAt                                                                 >  1:3391439/1‑151 (MQ=255)
                                                                                      aaaGGTAAGGAACCGGGCCTTGG‑ACGAAACACCAAAAAAA‑TCCTTTCCAG‑AATTAAAACCCAAAAAGGGT‑ATT‑ATCTCCCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCa                                                              <  1:361616/151‑1 (MQ=255)
                                                                                        aGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAAt                                                            >  1:2192377/1‑151 (MQ=255)
                                                                                            aaGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCa                                                        >  1:1901253/1‑151 (MQ=255)
                                                                                            aaGGAACCCGGCCTTTG‑ACGTAACACAAAAAAAA‑TACATTTCAGAAATTATAACCAAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCa                                                        <  1:951896/151‑1 (MQ=255)
                                                                                              ggAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCaaa                                                      >  1:2023946/1‑151 (MQ=255)
                                                                                                aacccGGCCTTGG‑ACGAAACAAAAAAAAAA‑TACATTACAAAAATAAAAACAAAAAAAGT‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAAt                                                    <  1:2006066/148‑1 (MQ=255)
                                                                                                aaTCCGGCTTTGG‑ACGAAACACCAAACAAA‑TACATTACAAAAATAAAAACAAAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAAt                                                    <  1:810439/151‑1 (MQ=255)
                                                                                                  tCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAAttt                                                  >  1:3241668/1‑151 (MQ=255)
                                                                                                     ggcttttG‑ACGAAACCCAAAAAAAA‑TACATTTAAGAAATAAAAACAAAAAAAGG‑T‑TTT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAg                                               <  1:550793/147‑1 (MQ=255)
                                                                                                        ctttgaacaaaaCACCAAACAAA‑TACATTAAAGAAATTATAACCAAAAAAGT‑A‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTTAAATTCAATGTCAAAATTTGAGGc                                             <  1:1591343/141‑1 (MQ=255)
                                                                                                         tttG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGctc                                           >  1:3241869/1‑151 (MQ=255)
                                                                                                         tttG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGcgc                                           >  1:669900/1‑149 (MQ=255)
                                                                                                          ttG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGctct                                          >  1:2660962/1‑151 (MQ=255)
                                                                                                          ttG‑ACATAACACAAAACAAA‑TACATTTCAGAAATTATAACCAAAAAGGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGctct                                          <  1:493990/151‑1 (MQ=255)
                                                                                                            tgacaaaaCACCAAAAAAA‑TATATTCCAGAAATTAAAACCAAAAAAGT‑T‑TTA‑ATCAACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTg                                         <  1:2558245/145‑1 (MQ=255)
                                                                                                              acgaaaCACAAAACAAA‑TACATTTCAGAAATTAAAACCAAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGtt                                       <  1:1963226/147‑1 (MQ=255)
                                                                                                                aaaaCACCAAAAAAA‑TACATTACAAAAATTAAAACAAAAAATGT‑T‑TTT‑ATCTCCCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGtttt                                     <  1:1403722/149‑1 (MQ=255)
                                                                                                                 aaaCACCAAAAAAA‑TACATTTCAAAAATTAAAACAAAAAAAGG‑T‑TTT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGttttt                                    <  1:2997861/150‑1 (MQ=255)
                                                                                                                  aaCACCAAACAAA‑TACATTTCAGCAATTATGACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTc                                   >  1:1849270/1‑151 (MQ=255)
                                                                                                                   accccAAAAAAA‑TACATTCCAGCAATTATAACCAAAAAAGT‑T‑ATT‑ATCTCCCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCt                                  <  1:3327715/148‑1 (MQ=255)
                                                                                                                   acacAAAAAAAA‑TACATTTCAGCAATTAAAACAAAAAAAGG‑T‑ATT‑ATCTCCCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCt                                  <  1:2839555/151‑1 (MQ=255)
                                                                                                                    cacaaaaaaaa‑TACATTCCAAAAATTAAAACAAAAAAAGT‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCtt                                 <  1:3420886/143‑1 (MQ=255)
                                                                                                                    cacCAAACAAA‑TGCATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCtt                                 >  1:2209236/1‑151 (MQ=255)
                                                                                                                     acaaaaaaaa‑TACATTTAAGAAATTAAAACAAAAAAAGT‑T‑ATT‑ACCCCCCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCttt                                <  1:2967850/144‑1 (MQ=255)
                                                                                                                      caaaacaaa‑TACATTCCAAAATTTAAAACCAAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTtta                               <  1:933620/149‑1 (MQ=255)
                                                                                                                       caaacaaa‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTttat                              >  1:1172912/1‑151 (MQ=255)
                                                                                                                       caaacaaa‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTttat                              >  1:216498/1‑151 (MQ=255)
                                                                                                                       caaacaaa‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTttat                              >  1:522129/1‑151 (MQ=255)
                                                                                                                            aaaatactttccacaaaTTATACCAGAAAAAGG‑T‑TTT‑ATCTCCCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTTTattatt                          <  1:146043/136‑1 (MQ=255)
                                                                                                                              aatacattaaaaaaaTTATAACAAAAAAAGG‑T‑TTT‑ATCTCCCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTTTAttattct                        <  1:3138492/138‑1 (MQ=255)
                                                                                                                                    tttaaaaaaTTAAAACCAAAAAAGT‑T‑TTT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTTTAttattctttttat                  <  1:2444124/144‑1 (MQ=255)
                                                                                                                                    ttccaacAATTATAACCAAAAAAGT‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTTTAttattctttttat                  <  1:2075582/145‑1 (MQ=255)
                                                                                                                                        aGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTTTAttattctttttattctt              >  1:1879979/1‑151 (MQ=255)
                                                                                                                                             ttATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTTTATTATTCTTTTTATTCttttttt         >  1:2471403/1‑151 (MQ=255)
                                                                                                                                                taACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTTTATTATTCTTTTTATTCTTTTTTTGcc      >  1:2103413/1‑151 (MQ=255)
                                                                                                                                                taACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTTTATTATTCTTTTTATTCTTTTTTTGcc      >  1:2053599/1‑151 (MQ=255)
                                                                                                                                                 aaCCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTGTGTTTTTCTTTATTATTCTTTTTATTCTTTTTTTGCCt     >  1:1392687/1‑151 (MQ=255)
                                                                                                                                                  aCCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTTTATTATTCTTTTTATTCTTTTTTTGCCTg    >  1:1395529/1‑151 (MQ=255)
                                                                                                                                                    cGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTTTATTATTCTTTTTATTCTTTTTTTGCCTGCt  >  1:1525521/1‑151 (MQ=255)
                                                                                                                                                     |                                                                                                                                                        
GAAACGGGAGAGCAAATTCCGATAGAAGAGCGAAGCCCTGCTGAAATAACTCATATCAAAGGCATCAGAATTGCTCCCGAAGGTGTAAAGGTAAGGAATCCGGCCTTTG‑ACGTAACACCAAACAAA‑TACATTTCAGCAATTATAACCGAAAAAGG‑T‑ATT‑ATCTACCCGCCATATGATGAAAATATAAAAAAATACAGGTAAATAAACTTCCGCAAAAATTTAAAAGCCTCAAATTCAATGTCAAAATTTGAGGCTCTGTTTTTCTTTATTATTCTTTTTATTCTTTTTTTGCCTGCT  >  CP002416/1877490‑1877786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑