Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0024161,440,9230GT34.0% 206.5 / 59.4 97V34F (GTT→TTT) Clo1313_1215phosphatidate cytidylyltransferase
Reads supporting (aligned to +/- strand):  ref base G (10/54);  new base T (33/0);  total (43/54)
Fisher's exact test for biased strand distribution p-value = 2.20e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 107 total aligned reads displayed.

GGCTATTTTGGATTATCAGAGGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCTTTTTTTCAGCAGATAATAT  >  CP002416/1440773‑1441073
                                                                                                                                                       |                                                                                                                                                           
ggCTATTTTGGATTATCAGAGGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTg                                                                                                                                                             <  1:1417730/151‑1 (MQ=255)
   tATTTTGGATTATCAGAGGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑tttttttttttt                                                                                                                                                          >  1:3104191/1‑151 (MQ=255)
   tATTTTGGATTATCAGAGGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑tttttttttttt                                                                                                                                                          >  1:1120407/1‑151 (MQ=255)
      tttGGATTATCAGAGGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTctt                                                                                                                                                       >  1:2612907/1‑149 (MQ=255)
       ttGGATTATCAGAGGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑CTTTTTTTTTTTTCAt                                                                                                                                                      >  1:1987571/1‑151 (MQ=255)
          gATTATCAGAGGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCt                                                                                                                                                  <  1:2334241/151‑1 (MQ=255)
           aTTATCAGAGGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAC‑GCtt                                                                                                                                                 >  1:3213948/1‑151 (MQ=255)
            ttATCAGAGGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑TCTTg                                                                                                                                                >  1:363567/1‑151 (MQ=255)
            ttATCAGAGGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTg                                                                                                                                                <  1:3309714/151‑1 (MQ=255)
                cAGAGGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCTT‑GCTTTCCAt                                                                                                                                            >  1:596760/1‑151 (MQ=255)
                cAGAGGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGttttccagcctggcat                                                                                                                                             >  1:551916/1‑138 (MQ=255)
                cAGAGGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCAt                                                                                                                                            <  1:1130270/151‑1 (MQ=255)
                 agagGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGCACGGCGG‑GTttttttttttttatggtttcgctg                                                                                                                                            >  1:402239/1‑137 (MQ=255)
                 agagGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAT‑GCtttgcctg                                                                                                                                           >  1:1284514/1‑145 (MQ=255)
                  gaggagAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGt                                                                                                                                          <  1:197030/151‑1 (MQ=255)
                     gagaAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATg                                                                                                                                       <  1:1197121/151‑1 (MQ=255)
                        aaaCAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGt                                                                                                                                    <  1:566979/151‑1 (MQ=255)
                          aCAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑t                                                                                                                                 <  1:2455082/151‑1 (MQ=255)
                            agaagaTTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGGGTTTTTTTTTTTTCC‑T‑TCTTGCCCTGTTTGAGTA‑ttt                                                                                                                               >  1:6119/1‑151 (MQ=255)
                               agaTTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTTAT‑GCTTGTCATGtttttgtttttttt                                                                                                                             >  1:3180449/1‑138 (MQ=255)
                               agaTTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAg                                                                                                                            <  1:3104485/151‑1 (MQ=255)
                                gaTTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGa                                                                                                                           <  1:327388/151‑1 (MQ=255)
                                 aTTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAT‑TGGTGCCATGTATAGGTA‑TTTTAGAt                                                                                                                          >  1:1081013/1‑151 (MQ=255)
                                 aTTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGAt                                                                                                                          <  1:1243702/151‑1 (MQ=255)
                                 aTTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGAt                                                                                                                          <  1:2131641/151‑1 (MQ=255)
                                    tGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCtt                                                                                                                       <  1:2042467/151‑1 (MQ=255)
                                        gggATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTTCT‑GCTTGCCCTTTATGTGTA‑tttttggtcttttat                                                                                                                   >  1:1388268/1‑139 (MQ=255)
                                        gggATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAT‑TCTTGCCATGTTTGAGTA‑TTTTTGATCtttttc                                                                                                                   >  1:2190086/1‑148 (MQ=255)
                                          gATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCCT‑GCTTTCCCTGTTTGAGGA‑TTTCAGATCtttttcaa                                                                                                                 >  1:762349/1‑146 (MQ=255)
                                                aaGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAg                                                                                                          <  1:1234492/151‑1 (MQ=255)
                                                 aGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCCT‑GCTTGGCATGTTTGAGGA‑TTTTAGATCtttttaaaaagccgg                                                                                                          >  1:1102895/1‑139 (MQ=255)
                                                  gTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGt                                                                                                        <  1:1156911/151‑1 (MQ=255)
                                                    tGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCCT‑TCTTGCCCTGTATGAGTA‑TTTTTGATCtttttcaaaatcagggta                                                                                                       >  1:3413534/1‑136 (MQ=255)
                                                    tGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAT‑GCTTGCCCTGTATGAGGA‑TTTTTGATCTTTTTCAAA‑TGCAgggta                                                                                                      >  1:516325/1‑148 (MQ=255)
                                                      cTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACa                                                                                                    <  1:2000477/151‑1 (MQ=255)
                                                         aaaaCCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCCT‑GCTTGCCATGTATGAGTA‑TTTTAGATCTTTTTCAAA‑TGCAgggttcaggg                                                                                                 >  1:2806236/1‑143 (MQ=255)
                                                          aaaCCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAT‑GCCTGCCATTTATGAGTA‑TTTCAGATCTTTGTCaaaagtagggttcaggcc                                                                                                 >  1:464826/1‑136 (MQ=255)
                                                             ccAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCCT‑GCTTTCCATGTTTGAGTA‑TTTCTGATCTTTTACAAA‑AGCAGGGTACAGGCCTG‑t                                                                                            >  1:2027712/1‑151 (MQ=255)
                                                             ccAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAT‑GCTTTACCTGTTTGGGTA‑TTTTAGGACTTTTACAAA‑AGCAGGTTTCAGGcccgt                                                                                             >  1:1206432/1‑148 (MQ=255)
                                                             ccAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAT‑GCTTGCCATGTTTGAGGA‑TTTTTGATCTTTTTCAAA‑TGCCGGGTTCAGGcccgg                                                                                             >  1:2935175/1‑148 (MQ=255)
                                                              cAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCTC‑GCTTGTCATGTTTGAGGA‑TTTTAGATCTTTTTCAAA‑TACAGGTTGCAGGcccctt                                                                                            >  1:3243209/1‑147 (MQ=255)
                                                              cAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCCT‑GCTTTCCCTGTATGGGTG‑TTTTTGATCTTTTTCAAA‑TGCAGGGTACAGGCCTG‑tt                                                                                           >  1:1278789/1‑150 (MQ=255)
                                                                 agTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAg                                                                                       <  1:2698226/151‑1 (MQ=255)
                                                                   tGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAT‑GCTTTCCCTGGTTGAGGA‑TTTTAGATTTTTTTCAAA‑TGCCGGTTACAGGGCCG‑T‑AAAggg                                                                                     >  1:270295/1‑150 (MQ=255)
                                                                     aTAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAT‑GCTTGCCCTGTTTGGGGA‑TTTCAGATCTTTTACAAA‑TGCAGGGTTCAGGGCTGGT‑AAAggtg                                                                                    >  1:1602249/1‑149 (MQ=255)
                                                                       aaGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCtgtg                                                                                 <  1:2509979/151‑1 (MQ=255)
                                                                        aGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTgg                                                                                <  1:1161600/151‑1 (MQ=255)
                                                                          cgcTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGGTGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGa                                                                              <  1:3043591/151‑1 (MQ=255)
                                                                           gcTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCCT‑GCTTGCCCTGTATGAGTA‑TTTTTGATCTTTTTCAAA‑TGCAGGGTTCAGGGCTG‑T‑AAAGGGTGTggggg                                                                             >  1:2265526/1‑149 (MQ=255)
                                                                             tctAGTGGGAGTCTTTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTCGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGatat                                                                           <  1:2824824/151‑1 (MQ=255)
                                                                             tctAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGatat                                                                           <  1:469796/151‑1 (MQ=255)
                                                                               tAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAT‑GCTTGCCCTGTATGAGGA‑TTTTAGATATTTTATAAA‑TGCCGGGTACAGGCCCG‑T‑GAAGGGGGTGGGgtatat                                                                         >  1:3294075/1‑151 (MQ=255)
                                                                                aGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATAtt                                                                        <  1:702379/151‑1 (MQ=255)
                                                                                 gTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATAttt                                                                       <  1:1081014/151‑1 (MQ=255)
                                                                                    ggAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCgt                                                                    <  1:2227654/151‑1 (MQ=255)
                                                                                       gTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGtgtg                                                                 <  1:2562923/151‑1 (MQ=255)
                                                                                          aTTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCg                                                              <  1:1178748/151‑1 (MQ=255)
                                                                                            tCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCTTCGCT‑GCCATGTTTGGGTA‑TTTTAAAACTTTTGCAAA‑AACAGGTTACAGGGCTG‑T‑TAAAGCTGGGGGATATATTTTGTGTGCGGCt                                                            >  1:8667/1‑151 (MQ=255)
                                                                                                ttGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAT‑GCTTTCCATGTATGAGTA‑TTTTAGATCTTTTACAAA‑AGCAGGGTTCAGGGCTG‑T‑AAAAGCTGTGGGGTATATTTTCTGTGTCGCtgttt                                                        >  1:781339/1‑151 (MQ=255)
                                                                                                ttGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCtgttt                                                        <  1:258298/151‑1 (MQ=255)
                                                                                                 tGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCCT‑GCTTTCCATGTATGAGTA‑TTTTAGATCTTTTACAAA‑AGCAGGGTACAGGGCCG‑T‑AAAGGGTGTGGGGTATATTTTGTGTGCCGCtgtttt                                                       >  1:1293012/1‑151 (MQ=255)
                                                                                                  gATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCCT‑GCTTGCCATGTATGAGTA‑TTTCAGGTCTTTTGCAAA‑AGCAGGGTACAGGGCCG‑T‑AAAGGGTGTGGGGGATATTTTGTGTGCCGCcgttttt                                                      >  1:1990280/1‑150 (MQ=255)
                                                                                                    ttGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCtgttttgtt                                                    <  1:172128/151‑1 (MQ=255)
                                                                                                         gTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGtttcttt                                               <  1:3367060/151‑1 (MQ=255)
                                                                                                         gTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGtttcttt                                               <  1:1557446/151‑1 (MQ=255)
                                                                                                          ttGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAT‑GCTTGCCCTGTTTGAGGA‑TTTTTGATCTTTTTCAAA‑AACAGGTTTCAAGCCCG‑T‑AAAGGCTGTGGGGTATATTTTGTGTGGCGCTGTTTTGtttttttt                                              >  1:2939648/1‑150 (MQ=255)
                                                                                                          ttGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGCTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGtttctttc                                              <  1:1889988/151‑1 (MQ=255)
                                                                                                            gTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAT‑GCTTTCCCTGTATGAGTAATTTC‑GATCTTTTACAAAATG‑AGGGTATAGGCCCG‑T‑AAAGGGTGTGGGGGATATTTTGTGTGGCGCCGtttttttttttttct                                            >  1:2550301/1‑148 (MQ=255)
                                                                                                                 ttCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGt                                       <  1:2463014/151‑1 (MQ=255)
                                                                                                                  tCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAT‑TCTTGCCCTGTATGAGTA‑TTTTAGATCTTTTTCAAA‑TGCAGGGTTCCGGCCTG‑T‑AAAGGGTGGGGGGTATATTTTGTGTGGCGCTGTTTTGTTTTTTTTCTgggggg                                      >  1:2027540/1‑147 (MQ=255)
                                                                                                                   cGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGa                                     <  1:2806235/151‑1 (MQ=255)
                                                                                                                   cGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGa                                     <  1:1073661/151‑1 (MQ=255)
                                                                                                                     ggACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTTTTTCCAT‑GCTTGCCCTGTATGAGGA‑TTTTAGATCTTTTGCAAA‑TGCAGGTTTCAGGGCTG‑TTAAAGG‑TGTGGGGGATATTTTGGGTGCCGCCGTTTTTtttctttttttgggggaag                                   >  1:1048823/1‑139 (MQ=255)
                                                                                                                     ggACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAg                                   <  1:1883143/151‑1 (MQ=255)
                                                                                                                      gACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCCGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAgt                                  <  1:1609002/151‑1 (MQ=255)
                                                                                                                          gATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTg                              <  1:107039/151‑1 (MQ=255)
                                                                                                                          gATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTg                              <  1:1130399/151‑1 (MQ=255)
                                                                                                                          gATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTg                              <  1:2166486/151‑1 (MQ=255)
                                                                                                                           aTGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGa                             <  1:731104/151‑1 (MQ=255)
                                                                                                                             ggTTCTTGGAACGGCGG‑TTTTTTTTTTTTCCCT‑GCTTGCCCTGTATGAGTA‑TTTTAGATCTTTTTCAAA‑AGCAGGGTACAGGCCTG‑T‑TAAAGCTGTGGGGTATATTTTGTGTGCCCCTGTTTTTTTTTTTTTCTTGGGTGAAGTGTTggaa                           >  1:387172/1‑148 (MQ=255)
                                                                                                                              gTTCTTGGAACGGCGG‑TTTTTTTTTTTTTCAT‑TCTTGCCCTGTATGAGTA‑TTTTAGATCTTTTTCAAA‑AGCAGGGTTCAGGCCCG‑T‑AAAAGCTGTGGGGTATATTTTGTGTGCCGCTGTTTTTTTTTTTTTCTGGAggggagggttggaaa                          >  1:3108297/1‑137 (MQ=255)
                                                                                                                                     gAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCttt                   <  1:539049/151‑1 (MQ=255)
                                                                                                                                     gAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCttt                   <  1:1074026/151‑1 (MQ=255)
                                                                                                                                      aaCGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATGTATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCtttt                  <  1:557311/151‑1 (MQ=255)
                                                                                                                                      aaCGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCtttt                  <  1:2174827/151‑1 (MQ=255)
                                                                                                                                       aCGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCttttt                 <  1:352711/151‑1 (MQ=255)
                                                                                                                                        cggcgg‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCtttttt                <  1:2552472/151‑1 (MQ=255)
                                                                                                                                          gcgg‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCTTTTTTTc              <  1:1901815/151‑1 (MQ=255)
                                                                                                                                          gcgg‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCTTTTTTTc              <  1:1489698/151‑1 (MQ=255)
                                                                                                                                           cgg‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCTTTTTTTca             >  1:3204912/1‑151 (MQ=255)
                                                                                                                                            gg‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCTTTTTTTcag            >  1:2728686/1‑151 (MQ=255)
                                                                                                                                            gg‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCTTTTTTTcag            >  1:2596162/1‑151 (MQ=255)
                                                                                                                                            gg‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCTTTTTTTcag            >  1:276330/1‑151 (MQ=255)
                                                                                                                                             g‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCTTTTTTTcagc           <  1:3414225/151‑1 (MQ=255)
                                                                                                                                             g‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCTTTTTTTcagc           >  1:1449698/1‑151 (MQ=255)
                                                                                                                                                 ttttttGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCTTTTTTTCAGCAGa        <  1:3031655/151‑1 (MQ=255)
                                                                                                                                                  tttttGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCTTTTTTTCAGCAGat       >  1:3229645/1‑151 (MQ=255)
                                                                                                                                                   ttttGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCTTTTTTTCAGCAGata      <  1:2544312/151‑1 (MQ=255)
                                                                                                                                                       gTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCTTTTTTTCAGCAGATAatat  <  1:1726356/151‑1 (MQ=255)
                                                                                                                                                       gTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCTTTTTTTCAGCAGATAatat  >  1:274743/1‑151 (MQ=255)
                                                                                                                                                       |                                                                                                                                                           
GGCTATTTTGGATTATCAGAGGAGAAACAGAAGATTTGGAGGGATATGAAGTTGCTAAAAACCAGAGTGATAAGCGCTCTAGTGGGAGTCATTCTTTTGATTGCGGTTGTATGTTCGGGACAGATGGTTCTTGGAACGGCGG‑TTTTTTTTGTTTCCAT‑GCTTGCCATGTATGAGTA‑TTTCAGATCTTTGACAAA‑TGCAGGTTACAGGCCTG‑T‑AAAGGCTGTGGGATATATTTCGTGTGCCGCTGTTTTGTTTCTTTCCTGGAGTGAAGTGTTGAAAAATTCTTTTTTTCAGCAGATAATAT  >  CP002416/1440773‑1441073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑