Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0024161,382,9250TG30.8% 247.8 / 36.4 121G352G (GGT→GGG) Clo1313_1161competence/damage‑inducible protein CinA
Reads supporting (aligned to +/- strand):  ref base T (12/71);  new base G (37/0);  total (50/71)
Fisher's exact test for biased strand distribution p-value = 7.49e-21
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 125 total aligned reads displayed.

TTACAGCAATGAAGCCAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCTTAATGCTTTTGA  >  CP002416/1382778‑1383074
                                                                                                                                                   |                                                                                                                                                          
ttACAGCAATGAAGCCAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTAtt                                                                                                                                                         <  1:3353075/151‑1 (MQ=255)
ttACAGCAATGAAGCCAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTAtt                                                                                                                                                         <  1:1903302/151‑1 (MQ=255)
   cAGCAATGAAGCCAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCa                                                                                                                                                      <  1:1699731/151‑1 (MQ=255)
   cAGCAATGAAGCCAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCa                                                                                                                                                      <  1:1365017/151‑1 (MQ=255)
    aGCAATGAAGCCAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTGCAg                                                                                                                                                     >  1:1325865/1‑151 (MQ=255)
      cgaTGAAGCCAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGt                                                                                                                                                   <  1:2964568/149‑1 (MQ=255)
       aaTGAAGCCAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTc                                                                                                                                                  <  1:1021758/151‑1 (MQ=255)
       aaTGAAGCCAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTc                                                                                                                                                  <  1:3306853/151‑1 (MQ=255)
        aTGAAGCCAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCTTCAACTGATATAGGGCTGGCGGTTACAGGAAtttccgggcc                                                                                                                                                 >  1:3068783/1‑143 (MQ=255)
            aGCCAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGAc                                                                                                                                            <  1:3381998/151‑1 (MQ=255)
            aGCCAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGCGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGGTACAGGCATTGccgggtccgcc                                                                                                                                             >  1:1386201/1‑141 (MQ=255)
              ccAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTGCAGGGCC‑TGACgg                                                                                                                                          >  1:1405899/1‑151 (MQ=255)
               cAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGa                                                                                                                                         <  1:1087077/151‑1 (MQ=255)
               cAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGa                                                                                                                                         <  1:2977629/151‑1 (MQ=255)
                aaGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTTCAGGGGTTGCAGGTGC‑TGACgggg                                                                                                                                        >  1:1402254/1‑149 (MQ=255)
                    tGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCAc                                                                                                                                    <  1:1013641/151‑1 (MQ=255)
                    tGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTGCAGGGGC‑TGACGGAGGCAc                                                                                                                                    >  1:3391026/1‑151 (MQ=255)
                    tGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTGCAGGGCC‑CGACGGAGGCAc                                                                                                                                    >  1:3410819/1‑151 (MQ=255)
                     ggAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACt                                                                                                                                   <  1:875947/151‑1 (MQ=255)
                       aaaaCCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACtga                                                                                                                                 <  1:364036/151‑1 (MQ=255)
                        aaaCCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTAGAGGTATTGGAGGGCC‑TGACGGGGGCagtggt                                                                                                                                >  1:1922902/1‑146 (MQ=255)
                        aaaCCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACtgat                                                                                                                                <  1:2564143/151‑1 (MQ=255)
                            cTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑aaa                                                                                                                           <  1:2249322/151‑1 (MQ=255)
                                gggTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑cc                                                                                                                      <  1:2113168/151‑1 (MQ=255)
                                gggTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTAAAGGGATTGCAGGGCC‑TGGCGGAGGCAACGATG‑aaaaaac                                                                                                                       >  1:2491329/1‑149 (MQ=255)
                                      aGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTggg                                                                                                                <  1:2312410/151‑1 (MQ=255)
                                        ccTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTGCAGGGCC‑TGACGGGGGCACTGATG‑AAAAA‑ACgggggggt                                                                                                              >  1:68415/1‑149 (MQ=255)
                                          tGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTg                                                                                                            <  1:3436469/151‑1 (MQ=255)
                                           gagaCTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTGCAGGTCC‑TGACGGGGGCGCTGATG‑AAAAA‑ACgggggggatgg                                                                                                           >  1:515727/1‑146 (MQ=255)
                                            agaCTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGt                                                                                                          <  1:2257506/151‑1 (MQ=255)
                                            agaCTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCGCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGt                                                                                                          <  1:2180875/151‑1 (MQ=255)
                                             gaCTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTTCAGGGCC‑TGACGGAGGGAATGATG‑AAAAA‑ACGGGGGGGTTgggt                                                                                                         >  1:2224444/1‑149 (MQ=255)
                                               cTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTa                                                                                                       <  1:870829/151‑1 (MQ=255)
                                               cTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTTCCGGGCC‑CGACGGAGGGCCTGATG‑AAAAA‑CCGGGGGGGTTgggttt                                                                                                       >  1:1512563/1‑147 (MQ=255)
                                               cTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTAAAGGGATTGGAGGGAC‑TGACGGGGGGACTGCTG‑AAAAA‑ACGGTggggtaggtatt                                                                                                       >  1:1315718/1‑142 (MQ=255)
                                                   ggAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGtt                                                                                                   <  1:204798/151‑1 (MQ=255)
                                                   ggAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGtt                                                                                                   <  1:2664653/151‑1 (MQ=255)
                                                   ggAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTAAAGGGATTGCAGGTCC‑TGACGGAGGCACTGGTG‑AAAAA‑CCGGTggggtttggttttgtt                                                                                                   >  1:734317/1‑138 (MQ=255)
                                                    gAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑g                                                                                                 <  1:3235258/151‑1 (MQ=255)
                                                       aaGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑Gccc                                                                                              <  1:2386703/151‑1 (MQ=255)
                                                        aGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTTCAGGGAATGCCGGGCC‑CGACGGGGGGACTGATG‑GAAAA‑AAGGGGGGGGTGGTTTATGTT‑ggccc                                                                                             >  1:3082447/1‑147 (MQ=255)
                                                         gTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTg                                                                                            <  1:1249815/151‑1 (MQ=255)
                                                          tACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTgg                                                                                           <  1:3165616/151‑1 (MQ=255)
                                                            cGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑cc                                                                                        <  1:894309/151‑1 (MQ=255)
                                                              gTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTGCAGGGCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGGGGGGTTGGGTTATGTT‑GCCCTGG‑cccc                                                                                      >  1:2907386/1‑150 (MQ=255)
                                                               tGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGGTTGGCGGGCC‑CGACGGGGGGACTGATGGAAAAA‑CGGGGGGGGTGGGTTT‑TGTT‑Gccccgggcccc                                                                                      >  1:207842/1‑143 (MQ=255)
                                                                 ccGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTGCAGGGCC‑TGACGGGGGCAATGATG‑AAAAA‑ACGGGGGGATTGGGTTATGTT‑GGCCTGG‑CCCATAg                                                                                   >  1:365393/1‑151 (MQ=255)
                                                                     aaGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTg                                                                               <  1:193087/151‑1 (MQ=255)
                                                                      agcagcCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTgg                                                                              <  1:1406051/151‑1 (MQ=255)
                                                                      agcagcCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATGGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTgg                                                                              <  1:2827888/151‑1 (MQ=255)
                                                                        cagcCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTgggg                                                                            <  1:927479/151‑1 (MQ=255)
                                                                         agcCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTGCAGGGCC‑CGACGGGGGGACCGATG‑GAAAA‑ACGGGGGGGTTGGTTTTTGTT‑GCCCTGG‑CCCCTAGCCCggggg                                                                           >  1:1678974/1‑150 (MQ=255)
                                                                           ccGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACg                                                                         <  1:1731110/151‑1 (MQ=255)
                                                                           ccGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACg                                                                         <  1:1989516/151‑1 (MQ=255)
                                                                           ccGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTGCAGGTCC‑TGACGGGGGCACTGGTG‑AAAAA‑ACGGGGGGGTTGGGTTATGTT‑GCCCTGG‑CCCCTAGCCCgggggcg                                                                         >  1:1978225/1‑148 (MQ=255)
                                                                            cGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTTCAAGGATTGCAAGGCC‑CCACGGAGGGACCGATG‑AAAAA‑ACGGGGGGGTTGGGTTATTTT‑TCCCCGG‑GCCCTAGCCTGGGGACgg                                                                        >  1:1755597/1‑151 (MQ=255)
                                                                            cGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTGCAGGTCC‑TGACGGGGGGACTGATG‑AAAAA‑CCGGGGGGGGTGGGTTATGTT‑GGCCTGG‑CCCCTAGCCTGGGGGCgg                                                                        >  1:3029078/1‑151 (MQ=255)
                                                                               aCTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAgg                                                                     <  1:2257306/151‑1 (MQ=255)
                                                                                cTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTGCAGGGCC‑TGACGGAGGCACTGATG‑AAAAA‑ACGGGGGGGTTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGGCgggggg                                                                    >  1:3083499/1‑147 (MQ=255)
                                                                                 tGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTa                                                                   <  1:1486339/151‑1 (MQ=255)
                                                                                 tGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTAAAGGGATTTCTGGGCC‑TTCCCGTGGGACAGTTG‑AAAAAACCGG‑GGGAATGGGTGATGTT‑GCCCTGG‑CCCAAAGCCTGGGGGCgggggga                                                                   >  1:482048/1‑146 (MQ=255)
                                                                                        gagaTGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACCGGGATTGCAGGACC‑TCACGGAGGCACTGATG‑AAAAA‑CCGGTGGGGTTGGTTTATGTT‑GGCCTGGGCCCA‑AGCCTGGGGGCGGAgggaaagggac                                                            >  1:2586998/1‑142 (MQ=255)
                                                                                            tGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTTCAGGACC‑TGACGGAGGCACTGCTT‑AAAAA‑ACCGTGGGAATTGTTTCTGTT‑GCCCTGG‑CCCCCACCCTGGGGAAGGCGGTAAggggacatag                                                        >  1:2649649/1‑144 (MQ=255)
                                                                                                tGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCtt                                                    <  1:3171704/151‑1 (MQ=255)
                                                                                                 gAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑ACGGGGGGGTTGGGTTTTGTT‑GCCCCGG‑GCCCTAGCCTGGGGGCGGGGGGAAGGGGACATAGGcgtg                                                   >  1:1025875/1‑148 (MQ=255)
                                                                                                       gtAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGa                                             <  1:2573713/151‑1 (MQ=255)
                                                                                                           ggAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGGATTTCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGGGGGGTTGGGTTATGTT‑GGCCCGG‑CCCCTAGCCTGGGGGCGGGGGGAAGGGGACTTAGGGTTGCCGGGgacag                                         >  1:216897/1‑151 (MQ=255)
                                                                                                            gAAAATCGCCTCAACTGATATAGGGCTGGCGGCTACAGGTATTGCAGGTCC‑TGAAGGAGGCACTGATG‑AAAAA‑ACGGGGGGGTTGGTTTATGTT‑GCCCCCG‑CCCATAGCCCGGGGGGGGAGGTAAGGGAACTTAGGCTTGCCGGGaataga                                        >  1:2310691/1‑151 (MQ=255)
                                                                                                             aaaaTCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGaacagaa                                       <  1:440397/151‑1 (MQ=255)
                                                                                                                 tCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGGGGCACTGATG‑AAAAA‑ACGGGGGGGTTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGGCGGGGGGAAGGGGACTTAGGGTTGCCGGGgacagaaacag                                   >  1:2422530/1‑151 (MQ=255)
                                                                                                                  cGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGaacagaaacaga                                  <  1:3268409/151‑1 (MQ=255)
                                                                                                                    ccTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAAt                                <  1:747940/151‑1 (MQ=255)
                                                                                                                    ccTCAACTGATATAGGGCTGGCGGTTACAGGGATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGGGGGGTTGGTTTATGTT‑GCCCTGG‑CCCCTAGCCTGGGGACGGGGGGAAGGGGACTTAGGCTTGCCGGGGacagaaacagaaa                                >  1:2256125/1‑150 (MQ=255)
                                                                                                                     cTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATa                               <  1:1402253/151‑1 (MQ=255)
                                                                                                                        aaCTGATATAGGGCTGGCGGTTACAGGGATTTCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGGGGGGTTGGTTTATGTT‑GCCCCGG‑CCCACAGCCTGGGGGCGGGGGGAAGGGGACTTAGGCTTGCCGGGGACAGAAACAGAATAAGa                            >  1:2592686/1‑151 (MQ=255)
                                                                                                                        aaCTGATATAGGGCTGGCGGTTACAGGGATTGGAGGTAC‑CGGCGGGGGCACTGATG‑AAAAA‑ACGGTGGGGTTGGTTTTTGGT‑GCCCCGG‑CCCATAGCCCGGGGGCGGGGGGAAGGGAAATTAGGCTTGCCGGGGAAAGAaaaagaaaaaga                            >  1:3269535/1‑151 (MQ=255)
                                                                                                                          cTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGaaa                          <  1:1184993/151‑1 (MQ=255)
                                                                                                                          cTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGaaa                          <  1:68416/151‑1 (MQ=255)
                                                                                                                           tGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAAc                         <  1:2807170/151‑1 (MQ=255)
                                                                                                                           tGATATAGGGCTGGCGGTTACAGGGATTTCCGGGCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGGGGGGTTGGTTTATGTT‑GCCCTGG‑GCCATAACCTGGGGGCGGGGGGGAGGGGAATTAGGCGTGCCGGGGACAGAAAaagaaaaagaaaa                         >  1:405843/1‑150 (MQ=255)
                                                                                                                             atatAGGGCTGGCGGTTACAGGGTTTTCAGGTCCCTG‑CGGAGGCACCGATG‑AAAAA‑CCGGGGGGGTTGGTTTATGTTTGCCC‑CG‑CCCCCAGCCCGGGGGCGGGGGGAAGGGAACTTAGGGTTGCCGGGGACAGAAACAGAATAAGaaaact                       >  1:2759442/1‑148 (MQ=255)
                                                                                                                               ataGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTa                     <  1:2830718/151‑1 (MQ=255)
                                                                                                                                   ggCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGt                 <  1:2672991/151‑1 (MQ=255)
                                                                                                                                      tGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCt              <  1:2292795/151‑1 (MQ=255)
                                                                                                                                       ggCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCtt             <  1:3432415/151‑1 (MQ=255)
                                                                                                                                       ggCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCtt             <  1:1543229/151‑1 (MQ=255)
                                                                                                                                       ggCGGTTACAGGGATTGCAGGTGC‑TGTCGGAGGCACTGATG‑AAAAA‑ACGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCCTAGCCTGGGGACGGAGGTAAGGGCACTTAGGCTTGCCGGGCACAGAAACAGAAAAAGAAACCCTACAGTGCtt             >  1:319883/1‑151 (MQ=255)
                                                                                                                                         cGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCTTaa           <  1:3068784/151‑1 (MQ=255)
                                                                                                                                           gTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCTTAATg         <  1:2323418/151‑1 (MQ=255)
                                                                                                                                            ttACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCTTAATGc        >  1:1291977/1‑151 (MQ=255)
                                                                                                                                             tACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCTTAATGCt       >  1:546937/1‑151 (MQ=255)
                                                                                                                                             tACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCTTAATGCt       >  1:614299/1‑151 (MQ=255)
                                                                                                                                             tACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCTTAATGCt       <  1:2365982/151‑1 (MQ=255)
                                                                                                                                              aCAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCTTAATGCtt      >  1:164931/1‑151 (MQ=255)
                                                                                                                                               cAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCTTAATGCttt     <  1:2811162/151‑1 (MQ=255)
                                                                                                                                               cAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCTTAATGCttt     <  1:1219917/151‑1 (MQ=255)
                                                                                                                                                aGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCTTAATGCtttt    >  1:535160/1‑151 (MQ=255)
                                                                                                                                                aGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCTTAATGCtttt    <  1:3206358/151‑1 (MQ=255)
                                                                                                                                                 ggTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTGATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCTTAATGCTTTTg   <  1:1896187/151‑1 (MQ=255)
                                                                                                                                                  gTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCTTAATGCTTTTGa  <  1:442935/151‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                          
TTACAGCAATGAAGCCAAGATGGAAAACCTCGGGGTTAAGCCTGAGACTTTGGAAAAGTACGGTGCCGTAAGCAGCCGGACTGCAATGGAGATGGCTGAAGGTGTAAGGAAAATCGCCTCAACTGATATAGGGCTGGCGGTTACAGGTATTGCAGGTCC‑TGACGGAGGCACTGATG‑AAAAA‑CCGGTGGGATTGGTTTATGTT‑GCCCTGG‑CCCATAGCCTGGGGACGGAGGTAAGGGAACTTAGGCTTGCCGGGAACAGAAACAGAATAAGAAACCTTACAGTGCTTAATGCTTTTGA  >  CP002416/1382778‑1383074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑