Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0024161,342,2080TG30.2% 276.2 / 25.1 126G352G (GGT→GGG) Clo1313_1122metal dependent phosphohydrolase
Reads supporting (aligned to +/- strand):  ref base T (19/69);  new base G (38/0);  total (57/69)
Fisher's exact test for biased strand distribution p-value = 2.60e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 132 total aligned reads displayed.

TATTCGCCAGGAAGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATAAAGAATCCAATG  >  CP002416/1342058‑1342356
                                                                                                                                                       |                                                                                                                                                     
tATTCGCCAGGAAGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGCTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑t                                                                                                                                                       >  1:863801/1‑151 (MQ=255)
   tCGCCAGGAAGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTg                                                                                                                                                    <  1:1981386/151‑1 (MQ=255)
     gCCAGGAAGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGAt                                                                                                                                                  <  1:716247/151‑1 (MQ=255)
     gCCAGGAAGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGAt                                                                                                                                                  <  1:2347456/151‑1 (MQ=255)
      ccAGGAAGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATg                                                                                                                                                 <  1:3025621/151‑1 (MQ=255)
       cAGGAAGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGGTTGGCGGG‑GTTGATgg                                                                                                                                                >  1:1986779/1‑151 (MQ=255)
        aGGAAGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGCTggg                                                                                                                                               >  1:1782085/1‑150 (MQ=255)
         ggAAGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATggcg                                                                                                                                              <  1:706431/151‑1 (MQ=255)
         ggAAGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATggcg                                                                                                                                              <  1:625329/151‑1 (MQ=255)
         ggAAGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATggcg                                                                                                                                              <  1:3037239/151‑1 (MQ=255)
          gAAGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATggcgg                                                                                                                                             <  1:3077529/151‑1 (MQ=255)
          gAAGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATggcgg                                                                                                                                             >  1:2918830/1‑151 (MQ=255)
           aaGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATggcggc                                                                                                                                            >  1:792260/1‑151 (MQ=255)
           aaGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGGTTGGCGGG‑GTtggtgggggg                                                                                                                                            >  1:1207731/1‑147 (MQ=255)
            aGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCa                                                                                                                                           <  1:1134199/151‑1 (MQ=255)
              gggAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCaga                                                                                                                                         <  1:761725/151‑1 (MQ=255)
                 aaaaTGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGTTGGCGGCAGAGcc                                                                                                                                      >  1:2387102/1‑150 (MQ=255)
                   aaTGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTTATGGGGGGAGAGCTTg                                                                                                                                    >  1:2802583/1‑151 (MQ=255)
                    aTGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTgg                                                                                                                                   <  1:1939172/151‑1 (MQ=255)
                       ccACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGt                                                                                                                                <  1:788112/151‑1 (MQ=255)
                        cacaTTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGtt                                                                                                                               <  1:2127386/151‑1 (MQ=255)
                         acaTTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTg                                                                                                                              <  1:2704440/151‑1 (MQ=255)
                         acaTTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATGGGGGCAGAGGTTgggggtg                                                                                                                              >  1:3474402/1‑146 (MQ=255)
                          caTTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGa                                                                                                                             <  1:342329/151‑1 (MQ=255)
                          caTTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATGGCGGCAGGGCTTgggggtgg                                                                                                                             >  1:1439727/1‑145 (MQ=255)
                             ttGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGt                                                                                                                          <  1:1134780/151‑1 (MQ=255)
                              tGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGTTGGCGGCAGAGCTTGGGGTTGATGtt                                                                                                                         >  1:2967643/1‑151 (MQ=255)
                                aaaCAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATGGCGGCGGAGCtttggggtggtgttaa                                                                                                                       >  1:1596919/1‑137 (MQ=255)
                                 aaCAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGGTTGGCGGG‑GTTGATGGCGGCAGGGCTTGGGGGTGATGtttat                                                                                                                      >  1:1392693/1‑148 (MQ=255)
                                  aCAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATGGCGGCCGAGCTTGGGGTTGGTGTTTATc                                                                                                                     >  1:1635770/1‑151 (MQ=255)
                                   cAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGGTGGGGGCAGGGCTTGGGGGTGGTGTTAATCt                                                                                                                    >  1:2917147/1‑151 (MQ=255)
                                     ggAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTg                                                                                                                  <  1:1676860/151‑1 (MQ=255)
                                     ggAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATGGCGGCAGAGGTTGGGGTTGTTGTTAATCTTg                                                                                                                  >  1:1510399/1‑151 (MQ=255)
                                      gAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTTATTGCGGCAGAGCTTGGGGGTGGTGGTAATCtttg                                                                                                                 >  1:571353/1‑149 (MQ=255)
                                            aTGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAagag                                                                                                           <  1:676143/151‑1 (MQ=255)
                                             tGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAgg                                                                                                          <  1:3208381/151‑1 (MQ=255)
                                                aTTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGGGTTTG‑TTGCGGCAGGGCTTTGGGTTGGTGTTTATCTTGCAAAGAggggg                                                                                                       >  1:733728/1‑149 (MQ=255)
                                                     aTCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCtt                                                                                                 <  1:1528540/151‑1 (MQ=255)
                                                               tGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGGGTTGATGTTAATCTTGCAAAGAGGG‑GAGGCTTGCTGCCCGat                                                                                       >  1:2017529/1‑151 (MQ=255)
                                                               tGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGat                                                                                       <  1:637037/151‑1 (MQ=255)
                                                                gTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGata                                                                                      <  1:2107406/151‑1 (MQ=255)
                                                                 tCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGatat                                                                                     <  1:2666286/151‑1 (MQ=255)
                                                                 tCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTTCAAAGAGGG‑CAGGCTTGCTGCACGatat                                                                                     >  1:389952/1‑151 (MQ=255)
                                                                  cAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATc                                                                                    >  1:523499/1‑151 (MQ=255)
                                                                         cTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATGGGGGCAGAGCTTGGGGGTGGTGTTAATCTTGCAAAGAGGG‑GAGGCTTGCTGCACGATATCGGCAAgg                                                                             >  1:1809225/1‑151 (MQ=255)
                                                                           tGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGcc                                                                           <  1:1305101/151‑1 (MQ=255)
                                                                             gTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGt                                                                         <  1:169121/151‑1 (MQ=255)
                                                                               aaGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGGTGGCGGCAGAGCTTGGGGTTTGTGTTTATCTTTCCAAGAGGGGCGGGCTT‑CTGCACGATATCGGccaagcccttg                                                                       >  1:170602/1‑141 (MQ=255)
                                                                               aaGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATGGCGGCAGAGCCTTGAGTTGATGTTAATCTTGCAAAGAAGG‑CAGGGTTGCTGCACGGTATCGGCAAgggcggtg                                                                       >  1:1504058/1‑145 (MQ=255)
                                                                                   ttAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGGGGCAGAGCTTGGAGGTTATGTTTATCTTTCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCa                                                                   >  1:2220214/1‑151 (MQ=255)
                                                                                   ttAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCa                                                                   >  1:986212/1‑151 (MQ=255)
                                                                                    tAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATGGCGGCAGAGCTTGGGGGTGATGTTAATCTTTCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGAccct                                                                  >  1:2340726/1‑149 (MQ=255)
                                                                                     aaGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATGGCGGCAGAGCTTGGAGGTGATGTTTATCTTTCAAAGAGGG‑GAGGCTTGCTGGACGATATCGGCAAGGGCGTTGAACATg                                                                 >  1:1503474/1‑151 (MQ=255)
                                                                                      aGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGGGTTTGTTGG‑GGCCGAGCCTGGAGGTGGTTTTTATCTTGGAAAAAGGG‑CCGGCGTGCTTCCCGAGATCGGCAAGGGCGGTGACCAttg                                                                >  1:494256/1‑149 (MQ=255)
                                                                                      aGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGa                                                                <  1:3328571/151‑1 (MQ=255)
                                                                                        tttAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAg                                                              <  1:3036746/151‑1 (MQ=255)
                                                                                         ttAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGGTGGCGGCCGGGGTTGGGGGTGATGTTAATCTTGCAAAAAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGccctttgccctgaagt                                                             >  1:1625929/1‑137 (MQ=255)
                                                                                         ttAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGGGGTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGCTGACCATGAAGt                                                             >  1:3473498/1‑151 (MQ=255)
                                                                                          tAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGtt                                                            <  1:3292878/151‑1 (MQ=255)
                                                                                           aGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTg                                                           <  1:1406076/151‑1 (MQ=255)
                                                                                           aGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTTATGGGGGCAGAGCTTGGAGGTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCCTTGACCATGAAggtg                                                           >  1:250214/1‑148 (MQ=255)
                                                                                                 aGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTTATGGCGGGAGGGCTTGGGGTTGGTGTTAATCTTGCCAAGAGGG‑CAGGCTTGCTGCCCGGTAACGGCAAGGCCGTTGACCATggaggtggagggg                                                     >  1:3400929/1‑139 (MQ=255)
                                                                                                   cTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTTGCGGG‑GTTGATTGCGGCAGAGCTTGGTGTTGTTTTTAATTTTTCAAAGAGGG‑GCGGCTTTCTGTACGAATTTGGGAAAGCCGTTTACCATGAAAGTGAAGGGtta                                                   >  1:1563482/1‑149 (MQ=255)
                                                                                                   cTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTca                                                   <  1:1717780/151‑1 (MQ=255)
                                                                                                   cTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATGGCGGCAGAGCTTGGGGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAggggca                                                   >  1:3150021/1‑148 (MQ=255)
                                                                                                      tGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGGTTACCCTGAAGTTGAAGGGTCacac                                                >  1:406868/1‑151 (MQ=255)
                                                                                                         ccAAAATGTTTTGAGCCTTTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGtt                                             <  1:670210/151‑1 (MQ=255)
                                                                                                          cAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGGTGGCGGCAGAGCTTGGAGGTGGTGTTAATCTTGCCAAAAGGG‑CAGGGTTGCTGCCCGATATCGGCAAAGCCGTTGACCATTAAGTTGaaagggcccccggta                                            >  1:377713/1‑138 (MQ=255)
                                                                                                          cAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑GTTGATGGCGGCCGAGCTTGGAGGTGGTGTTAATTTTGCAAAGAGGG‑GAGGGTTGCTGCACGATATCGGCAAGGGCGTTGAACATGAAGGTGAAGGGTCACACGTTa                                            >  1:2974939/1‑151 (MQ=255)
                                                                                                            aaaTGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACg                                          <  1:2335022/151‑1 (MQ=255)
                                                                                                                 ttttGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGGAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑GCGGCTTGCTGCACGGTATTGGCAAGGCCGGTTACCATGGAGTTGGAGGGGCACACGGTACGATTgg                                     >  1:2834689/1‑151 (MQ=255)
                                                                                                                   ttGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAg                                   <  1:435992/151‑1 (MQ=255)
                                                                                                                       gCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGa                               <  1:1605512/151‑1 (MQ=255)
                                                                                                                       gCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGa                               <  1:3081554/151‑1 (MQ=255)
                                                                                                                         cattccattGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACa                             <  1:1248671/151‑1 (MQ=255)
                                                                                                                         cattccattGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACa                             <  1:830088/151‑1 (MQ=255)
                                                                                                                          attccattGAAGTGGCTCGTTTGGCGGG‑GTTGATGGCGGCAGAGCTTGGGGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACAt                            >  1:1851854/1‑151 (MQ=255)
                                                                                                                          attccattGAAGTGGCTCGTTTGGCGGG‑GTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGAACATGAAGGTGAAGGGGCACACGTTACGATTGGGGCTGACAt                            >  1:2333418/1‑151 (MQ=255)
                                                                                                                           ttccattGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACAtt                           <  1:2752592/151‑1 (MQ=255)
                                                                                                                             ccattGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGc                         <  1:2339595/151‑1 (MQ=255)
                                                                                                                              cattGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCt                        <  1:2725871/151‑1 (MQ=255)
                                                                                                                                 tGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTaaa                     <  1:1851300/151‑1 (MQ=255)
                                                                                                                                   aaGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTaaaaa                   <  1:1473222/151‑1 (MQ=255)
                                                                                                                                   aaGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTaaaaa                   >  1:2651815/1‑151 (MQ=255)
                                                                                                                                        gCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGtata              >  1:1004344/1‑151 (MQ=255)
                                                                                                                                         cTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATaa             <  1:428420/151‑1 (MQ=255)
                                                                                                                                           cGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATAAAg           >  1:1101098/1‑151 (MQ=255)
                                                                                                                                            gTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATaagga          >  1:2658703/1‑148 (MQ=255)
                                                                                                                                            gTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATAAAGa          <  1:3307318/151‑1 (MQ=255)
                                                                                                                                             tttGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATAAAGaa         <  1:3197861/151‑1 (MQ=255)
                                                                                                                                             tttGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATAAAGaa         <  1:2685197/151‑1 (MQ=255)
                                                                                                                                              ttGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATAAAGAAt        <  1:2989871/151‑1 (MQ=255)
                                                                                                                                               tGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATAAAGAATc       <  1:428343/151‑1 (MQ=255)
                                                                                                                                                 gCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATAAAGAATCCa     <  1:2175214/151‑1 (MQ=255)
                                                                                                                                                 gCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATAAAGAATCCa     <  1:3447452/151‑1 (MQ=255)
                                                                                                                                                  cGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGAAGTTAAACTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGGCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATAAAGAATCCaa    <  1:398224/151‑1 (MQ=255)
                                                                                                                                                   ggg‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATAAAGAATCCAAt   <  1:578901/151‑1 (MQ=255)
                                                                                                                                                   ggg‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATAAAGAATCCAAt   >  1:3306792/1‑151 (MQ=255)
                                                                                                                                                   ggg‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATAAAGAATCCAAt   >  1:493798/1‑151 (MQ=255)
                                                                                                                                                    gg‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATAAAGAATCCAATg  <  1:3184129/151‑1 (MQ=255)
                                                                                                                                                       |                                                                                                                                                     
TATTCGCCAGGAAGGGGAAAATGCCACATTTGAAACAGGAGTCCATGGATTGCATCCTGAGATTGTCAGATTGCTTGGTAAGCTTAAGTTTAGAACAAGCTATGGCCAAAATGTTTTGAGCCATTCCATTGAAGTGGCTCGTTTGGCGGG‑TTTGATGGCGGCAGAGCTTGGAGTTGATGTTAATCTTGCAAAGAGGG‑CAGGCTTGCTGCACGATATCGGCAAGGCCGTTGACCATGAAGTTGAAGGGTCACACGTTACGATTGGAGCTGACATTGCTAAAAAGTATAAAGAATCCAATG  >  CP002416/1342058‑1342356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑