New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP002416 = 3474171174 (1.190)21 (0.180) 19/246 10.8 12.9% intergenic (‑737/+109) Clo1313_2959/Clo1313_2961 CheW protein/integrase family protein
?CP002416 = 3475049 141 (1.180)intergenic (‑209/‑192) Clo1313_2961/Clo1313_2962 integrase family protein/transcriptional regulator, AraC family
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 176 total aligned reads displayed.

GTAACGCTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAAT  >  CP002416/3474899‑3475199
                                                                                                                                                       |                                                                                                                                                      
   aCGCTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCaaa                                                                                                                                                     >  1:554438/1‑151 (MQ=255)
     gCTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGt                                                                                                                                                   <  1:2084816/151‑1 (MQ=255)
      cTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTa                                                                                                                                                  >  1:252464/1‑151 (MQ=255)
      cTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTa                                                                                                                                                  <  1:399393/151‑1 (MQ=255)
        aCTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAAc                                                                                                                                                >  1:1391714/1‑151 (MQ=255)
           cAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACaaa                                                                                                                                             >  1:1605670/1‑151 (MQ=255)
           cAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACaaa                                                                                                                                             <  1:1747720/151‑1 (MQ=255)
           cAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACaaa                                                                                                                                             >  1:591555/1‑151 (MQ=255)
             aaCACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAAt                                                                                                                                           <  1:1659802/151‑1 (MQ=255)
              acacTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATg                                                                                                                                          >  1:1399442/1‑151 (MQ=255)
               cacTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATgg                                                                                                                                         <  1:1825629/151‑1 (MQ=255)
                acTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATggg                                                                                                                                        <  1:2421006/151‑1 (MQ=255)
                     tGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCatat                                                                                                                                   >  1:1841582/1‑151 (MQ=255)
                       tATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTg                                                                                                                                 >  1:2739510/1‑151 (MQ=255)
                         tttCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGtt                                                                                                                               >  1:490142/1‑151 (MQ=255)
                         tttCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGtt                                                                                                                               <  1:3326104/151‑1 (MQ=255)
                          ttCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTa                                                                                                                              <  1:1006751/151‑1 (MQ=255)
                           tCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTAc                                                                                                                             <  1:1513201/151‑1 (MQ=255)
                            cTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACt                                                                                                                            <  1:89420/151‑1 (MQ=255)
                             tAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACtt                                                                                                                           <  1:2846307/151‑1 (MQ=255)
                              aaaGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACttt                                                                                                                          <  1:2343135/151‑1 (MQ=255)
                               aaGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTa                                                                                                                         >  1:2748400/1‑151 (MQ=255)
                                 gTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTaaa                                                                                                                       <  1:2655611/151‑1 (MQ=255)
                                   aataaATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTaaaaa                                                                                                                     >  1:189721/1‑151 (MQ=255)
                                     taaATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAAc                                                                                                                   >  1:1136815/1‑151 (MQ=255)
                                          cTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGaa                                                                                                              >  1:1773004/1‑151 (MQ=255)
                                           tATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAt                                                                                                             >  1:1305046/1‑151 (MQ=255)
                                             tCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAttt                                                                                                           >  1:1956522/1‑151 (MQ=255)
                                             tCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAttt                                                                                                           >  1:2225106/1‑151 (MQ=255)
                                             tCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACATTaataaagtgaaaaat                                                                                                           <  1:2590616/151‑10 (MQ=38)
                                               aTAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAttttt                                                                                                         >  1:3247128/1‑151 (MQ=255)
                                                tAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAtttttt                                                                                                        >  1:3067155/1‑151 (MQ=255)
                                                  aaTATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTcc                                                                                                      >  1:2557002/1‑151 (MQ=255)
                                                  aaTATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTcc                                                                                                      >  1:2176889/1‑151 (MQ=255)
                                                   atatTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCt                                                                                                     >  1:2504242/1‑151 (MQ=255)
                                                    tattatAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCtt                                                                                                    >  1:1956809/1‑151 (MQ=255)
                                                     attatAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCttt                                                                                                   <  1:3309735/151‑1 (MQ=255)
                                                     attatAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCttt                                                                                                   <  1:2794234/151‑1 (MQ=255)
                                                       tataAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTtct                                                                                                 <  1:1031682/151‑1 (MQ=255)
                                                        ataAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTtctg                                                                                                >  1:2903644/1‑150 (MQ=255)
                                                         taAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTctct                                                                                               >  1:2567390/1‑151 (MQ=255)
                                                         taAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTctct                                                                                               <  1:920137/151‑1 (MQ=255)
                                                          aaaaaaGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCtt                                                                                              >  1:2155551/1‑151 (MQ=255)
                                                           aaaaaGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTa                                                                                             <  1:2032616/151‑1 (MQ=255)
                                                           aaaaaGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTa                                                                                             >  1:2634356/1‑151 (MQ=255)
                                                            aaaaGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTaa                                                                                            >  1:3146692/1‑151 (MQ=255)
                                                              aaGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAAtt                                                                                          <  1:2336061/151‑1 (MQ=255)
                                                              aaGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAAtt                                                                                          >  1:960673/1‑151 (MQ=255)
                                                               aGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTc                                                                                         >  1:2353699/1‑151 (MQ=255)
                                                               aGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTc                                                                                         <  1:1643435/151‑1 (MQ=255)
                                                                gATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCt                                                                                        >  1:3316855/1‑151 (MQ=255)
                                                                 aTACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCtt                                                                                       <  1:1498703/151‑1 (MQ=255)
                                                                      ttGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATAtt                                                                                  <  1:3239840/151‑1 (MQ=255)
                                                                       ttgtttttATAAGAAAAAAATCAAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATAtt                                                                                  <  1:1152234/148‑1 (MQ=255)
                                                                        gTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATAtttt                                                                                >  1:1241739/1‑151 (MQ=255)
                                                                        gTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATAtttt                                                                                <  1:2262862/151‑1 (MQ=255)
                                                                         ttttttATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTtc                                                                               <  1:1304933/151‑1 (MQ=255)
                                                                           ttttATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTtctc                                                                             >  1:2130008/1‑151 (MQ=255)
                                                                            tttATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTcc                                                                            >  1:1111303/1‑151 (MQ=255)
                                                                             ttATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCt                                                                           >  1:3480607/1‑151 (MQ=255)
                                                                             ttATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCt                                                                           <  1:2125579/151‑1 (MQ=255)
                                                                             ttATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCt                                                                           >  1:1968736/1‑151 (MQ=255)
                                                                              tataCGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCtt                                                                          <  1:669968/151‑1 (MQ=255)
                                                                              tataCGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCtt                                                                          <  1:2313113/151‑1 (MQ=255)
                                                                              tataCGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCtt                                                                          <  1:1366251/151‑1 (MQ=255)
                                                                              tataCGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCtt                                                                          >  1:2051018/1‑151 (MQ=255)
                                                                              tataCGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCtt                                                                          <  1:2001532/151‑1 (MQ=255)
                                                                                  cGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTaaaa                                                                      >  1:1275353/1‑151 (MQ=255)
                                                                                   gAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGACTTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAAt                                                                     >  1:869870/1‑151 (MQ=255)
                                                                                    aaaaaaaTCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATGTTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATc                                                                    <  1:3272658/151‑1 (MQ=255)
                                                                                    aaaaaaaTCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATc                                                                    >  1:842017/1‑151 (MQ=255)
                                                                                    aaaaaaaTCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATc                                                                    <  1:2253295/151‑1 (MQ=255)
                                                                                     aaaaaaTCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCt                                                                   >  1:775948/1‑151 (MQ=255)
                                                                                       aaaaTCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTAt                                                                 <  1:1345613/151‑1 (MQ=255)
                                                                                        aaaTCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTAtt                                                                <  1:452098/151‑1 (MQ=255)
                                                                                        aaaTCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTAtt                                                                <  1:833716/151‑1 (MQ=255)
                                                                                             aaaaaaaaa‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCct                                                           <  1:727006/151‑1 (MQ=255)
                                                                                                  aaaa‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCa                                                      <  1:3424386/151‑1 (MQ=255)
                                                                                                   aaa‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCaa                                                     >  1:2713341/1‑151 (MQ=255)
                                                                                                     a‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACa                                                   <  1:3000140/151‑1 (MQ=255)
                                                                                                     a‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACa                                                   <  1:1599114/151‑1 (MQ=255)
                                                                                                     a‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACa                                                   >  1:1708818/1‑151 (MQ=255)
                                                                                                     a‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACa                                                   <  1:182868/151‑1 (MQ=255)
                                                                                                         cTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTc                                                <  1:381477/151‑1 (MQ=255)
                                                                                                           aTTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCa                                              <  1:3078172/151‑1 (MQ=255)
                                                                                                               aaTATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAAt                                          >  1:2945657/1‑151 (MQ=255)
                                                                                                                   tGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGa                                      >  1:2272913/1‑151 (MQ=255)
                                                                                                                       aCCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAAttt                                  >  1:992153/1‑151 (MQ=255)
                                                                                                                         cTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTgc                                <  1:285464/151‑1 (MQ=255)
                                                                                                                                  ataataATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACaa                       >  1:1419845/1‑151 (MQ=255)
                                                                                                                                   taataaTTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAAt                      <  1:2611905/151‑1 (MQ=255)
                                                                                                                                       aatTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGaa                  >  1:741679/1‑151 (MQ=255)
                                                                                                                                        atTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAAt                 <  1:212033/151‑1 (MQ=255)
                                                                                                                                        atTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAAt                 >  1:1085650/1‑151 (MQ=255)
                                                                                                                                         ttttCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAAtt                >  1:2048510/1‑151 (MQ=255)
                                                                                                                                         ttttCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAAtt                <  1:2201958/151‑1 (MQ=255)
                                                                                                                                                ttATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTaa         >  1:1442622/1‑151 (MQ=255)
                                                                                                                                                    tGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTa     <  1:318491/151‑1 (MQ=255)
                                                                                                                                                    tGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTa     <  1:2170661/151‑1 (MQ=255)
                                                                                                                                                       cAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTACCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAAt  >  1:2476023/1‑151 (MQ=255)
                                                                                                                                                       |                                                                                                                                                      
GTAACGCTACTCAAACACTTATGTATTTCTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAAT  >  CP002416/3474899‑3475199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.