New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP002416 3474145 =164 (1.130)19 (0.160) 19/246 10.8 12.0% intergenic (‑711/+135) Clo1313_2959/Clo1313_2961 CheW protein/integrase family protein
?CP002416 3475077 = 144 (1.210)intergenic (‑237/‑164) Clo1313_2961/Clo1313_2962 integrase family protein/transcriptional regulator, AraC family
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 175 total aligned reads displayed.

CTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCTATAATTAATAATAAAACAAG  >  CP002416/3474927‑3475227
                                                                                                                                                       |                                                                                                                                                      
cTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACt                                                                                                                                                        >  1:359049/1‑151 (MQ=255)
  aaaGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACttt                                                                                                                                                      >  1:2191494/1‑151 (MQ=255)
   aaGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTa                                                                                                                                                     >  1:2748400/1‑151 (MQ=255)
     gTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTaaa                                                                                                                                                   <  1:2655611/151‑1 (MQ=255)
     gTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTaaa                                                                                                                                                   <  1:2949682/151‑1 (MQ=255)
       aataaATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTaaaaa                                                                                                                                                 >  1:189721/1‑151 (MQ=255)
            aTCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAgg                                                                                                                                            >  1:2269036/1‑151 (MQ=255)
              cTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGaa                                                                                                                                          >  1:1773004/1‑151 (MQ=255)
                aTCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAtt                                                                                                                                        >  1:611862/1‑151 (MQ=255)
                 tCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAttt                                                                                                                                       >  1:2225106/1‑151 (MQ=255)
                 tCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAttt                                                                                                                                       >  1:1956522/1‑151 (MQ=255)
                  cATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAtttt                                                                                                                                      <  1:1974730/151‑1 (MQ=255)
                    tAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGTGCATATTGTTACTTTAAAAAACAGGAAtttttt                                                                                                                                    >  1:2562862/1‑151 (MQ=255)
                    tAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAtttttt                                                                                                                                    >  1:3067155/1‑151 (MQ=255)
                    tAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAAtttttt                                                                                                                                    <  1:838520/151‑1 (MQ=255)
                      aaTATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTcc                                                                                                                                  >  1:2557002/1‑151 (MQ=255)
                       atatTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCt                                                                                                                                 >  1:2504242/1‑151 (MQ=255)
                         attatAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCttt                                                                                                                               <  1:3309735/151‑1 (MQ=255)
                         attatAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCttt                                                                                                                               <  1:2794234/151‑1 (MQ=255)
                           tataAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTtct                                                                                                                             <  1:1031682/151‑1 (MQ=255)
                           tataAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTtct                                                                                                                             >  1:2636150/1‑151 (MQ=255)
                           tataAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTtct                                                                                                                             <  1:1411486/151‑1 (MQ=255)
                              aaaaaaGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCtt                                                                                                                          >  1:972198/1‑151 (MQ=255)
                              aaaaaaGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCtt                                                                                                                          <  1:2315989/151‑1 (MQ=255)
                              aaaaaaGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCtt                                                                                                                          >  1:2155551/1‑151 (MQ=255)
                              aaaaaaGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCtt                                                                                                                          >  1:2138346/1‑151 (MQ=255)
                                aaaaGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTaa                                                                                                                        <  1:916819/151‑1 (MQ=255)
                                aaaaGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTaa                                                                                                                        >  1:3146692/1‑151 (MQ=255)
                                  aaGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAAtt                                                                                                                      >  1:960673/1‑151 (MQ=255)
                                   aGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTc                                                                                                                     >  1:2353699/1‑151 (MQ=255)
                                    gATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCt                                                                                                                    >  1:3316855/1‑151 (MQ=255)
                                     aTACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCtt                                                                                                                   <  1:1498703/151‑1 (MQ=255)
                                          ttGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATAtt                                                                                                              <  1:3239840/151‑1 (MQ=255)
                                           ttgtttttATAAGAAAAAAATCAAAAAAAAAATACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATAtt                                                                                                              <  1:1152234/148‑1 (MQ=255)
                                             ttttttATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTtc                                                                                                           <  1:1304933/151‑1 (MQ=255)
                                                 ttATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCt                                                                                                       <  1:2125579/151‑1 (MQ=255)
                                                 ttATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCt                                                                                                       >  1:1968736/1‑151 (MQ=255)
                                                  tataCGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCtt                                                                                                      <  1:1366251/151‑1 (MQ=255)
                                                  tataCGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCtt                                                                                                      <  1:2313113/151‑1 (MQ=255)
                                                       gAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGACTTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAAt                                                                                                 >  1:869870/1‑151 (MQ=255)
                                                        aaaaaaaTCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATc                                                                                                >  1:842017/1‑151 (MQ=255)
                                                        aaaaaaaTCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATc                                                                                                <  1:2253295/151‑1 (MQ=255)
                                                           aaaaTCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTAt                                                                                             <  1:1345613/151‑1 (MQ=255)
                                                                 aaaaaaaaa‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCct                                                                                       <  1:2104041/151‑1 (MQ=255)
                                                                      aaaa‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCa                                                                                  <  1:3424386/151‑1 (MQ=255)
                                                                       aaa‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCaa                                                                                 >  1:447931/1‑151 (MQ=255)
                                                                       aaa‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCaa                                                                                 >  1:2713341/1‑151 (MQ=255)
                                                                         a‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACa                                                                               <  1:182868/151‑1 (MQ=255)
                                                                         a‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACa                                                                               >  1:1708818/1‑151 (MQ=255)
                                                                           tACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAg                                                                              <  1:1100532/151‑1 (MQ=255)
                                                                             cTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTc                                                                            <  1:381477/151‑1 (MQ=255)
                                                                               aTTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCa                                                                          <  1:3078172/151‑1 (MQ=255)
                                                                                   aaTATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAAt                                                                      >  1:2945657/1‑151 (MQ=255)
                                                                                   aaTATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAAt                                                                      <  1:46136/151‑1 (MQ=255)
                                                                                          aaCCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAAtt                                                               >  1:2338952/1‑151 (MQ=255)
                                                                                          aaCCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAAtt                                                               <  1:947707/151‑1 (MQ=255)
                                                                                           aCCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAAttt                                                              >  1:992153/1‑151 (MQ=255)
                                                                                             cTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTgc                                                            <  1:160552/151‑1 (MQ=255)
                                                                                             cTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTgc                                                            <  1:285464/151‑1 (MQ=255)
                                                                                                  aaaTATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCAtt                                                       >  1:1077882/1‑151 (MQ=255)
                                                                                                      ataataATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACaa                                                   >  1:1419845/1‑151 (MQ=255)
                                                                                                      ataataATTTTCGATTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACaa                                                   >  1:729213/1‑151 (MQ=255)
                                                                                                       taataaTTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAAt                                                  <  1:2611905/151‑1 (MQ=255)
                                                                                                        aataatTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATc                                                 <  1:2078051/151‑1 (MQ=255)
                                                                                                        aataatTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATc                                                 <  1:719863/151‑1 (MQ=255)
                                                                                                        aataatTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATc                                                 <  1:1516742/151‑1 (MQ=255)
                                                                                                          taatTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGa                                               <  1:510607/151‑1 (MQ=255)
                                                                                                           aatTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGaa                                              >  1:741679/1‑151 (MQ=255)
                                                                                                             ttttCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAAtt                                            >  1:2048510/1‑151 (MQ=255)
                                                                                                              tttCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTg                                           <  1:1132469/151‑1 (MQ=255)
                                                                                                              tttCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTg                                           <  1:1288259/151‑1 (MQ=255)
                                                                                                               gaagtatatttttaaaGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGa                                          >  1:2449430/14‑151 (MQ=255)
                                                                                                                tCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGAc                                         <  1:2575175/151‑1 (MQ=255)
                                                                                                                  gCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCt                                       >  1:1255342/1‑151 (MQ=255)
                                                                                                                    ttATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTaa                                     >  1:2010029/1‑151 (MQ=255)
                                                                                                                    ttATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTaa                                     >  1:1442622/1‑151 (MQ=255)
                                                                                                                        tGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTa                                 <  1:318491/151‑1 (MQ=255)
                                                                                                                        tGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTa                                 <  1:2170661/151‑1 (MQ=255)
                                                                                                                           cAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAAt                              >  1:167005/1‑151 (MQ=255)
                                                                                                                            aaaGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATc                             <  1:2241682/151‑1 (MQ=255)
                                                                                                                               gTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCtt                          <  1:326509/151‑1 (MQ=255)
                                                                                                                                tAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTg                         >  1:1866550/1‑151 (MQ=255)
                                                                                                                                 aaCAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTgg                        >  1:1162769/1‑151 (MQ=255)
                                                                                                                                 aaCAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTgg                        <  1:77607/151‑1 (MQ=255)
                                                                                                                                    aaaaTGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCta                     <  1:3167915/151‑1 (MQ=255)
                                                                                                                                      aaTGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCtata                   >  1:233244/1‑151 (MQ=255)
                                                                                                                                      aaTGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCtata                   <  1:1860460/151‑1 (MQ=255)
                                                                                                                                        tGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCACCAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCTAtaat                 <  1:3276604/151‑1 (MQ=255)
                                                                                                                                        tGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCTAtaat                 <  1:2155550/151‑1 (MQ=255)
                                                                                                                                          ggCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCTAtaatta               <  1:2812099/151‑1 (MQ=255)
                                                                                                                                            cATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCTAtaattaat             >  1:3387060/1‑151 (MQ=255)
                                                                                                                                               atTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCTATAATtaataat          >  1:1494068/1‑151 (MQ=255)
                                                                                                                                               atTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCTATAATtaataat          <  1:3480606/151‑1 (MQ=255)
                                                                                                                                               atTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCTATAATtaataat          >  1:2397167/1‑151 (MQ=255)
                                                                                                                                                 tGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCTATAATtaataataa        <  1:3262933/151‑1 (MQ=255)
                                                                                                                                                 tGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCTATAATtaataataa        >  1:1231632/1‑151 (MQ=255)
                                                                                                                                                  gTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCTATAATTAATAATaaa       <  1:2899797/151‑1 (MQ=255)
                                                                                                                                                   ttACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCTATAATTAATAATaaaa      >  1:812775/1‑151 (MQ=255)
                                                                                                                                                   ttACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCTATAATTAATAATaaaa      >  1:35894/1‑151 (MQ=255)
                                                                                                                                                       tttAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCTCTCTCCAACAGTCCATAATCTGAACTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCTATAATTAATAATAAAACAAg  >  1:1637947/1‑151 (MQ=255)
                                                                                                                                                       |                                                                                                                                                      
CTAAAGTAATAAATCTATCATAAATATTATAAAAAAGATACATTGTTTTTTATACGAAAAAAATCAAAAAAAAA‑TACTATTTAATATGAAACCTGCTAAATATAATAATTTTCGCTTATTGCCAAAGTAACAAAATGGGCATATTGTTACTTTAAAAAACAGGAATTTTTTCCTTTCTCTTAATTCTTATATTTTCTCCTTAAAATCTATTTCCCTCTCCAACAGTCCATAATCTGAATTTGCGCATTACAATCGAATTGACCTAATGTAAATCCTTGGCTATAATTAATAATAAAACAAG  >  CP002416/3474927‑3475227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.