New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP002416 = 3474171174 (1.190)21 (0.180) 19/246 10.8 12.9% intergenic (‑737/+109) Clo1313_2959/Clo1313_2961 CheW protein/integrase family protein
?CP002416 = 3475049 141 (1.180)intergenic (‑209/‑192) Clo1313_2961/Clo1313_2962 integrase family protein/transcriptional regulator, AraC family
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 176 total aligned reads displayed.

CTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTT‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCT  >  CP002416/3474021‑3474320
                                                                                                                                                      |                                                                                                                                                      
 ttCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATCTAACAATATGCCCATTTTGTTACTTTa                                                                                                                                                       >  1:3148280/1‑151 (MQ=255)
   cATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTaaa                                                                                                                                                     >  1:1156808/1‑151 (MQ=255)
    aTAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTaaaa                                                                                                                                                    >  1:1485635/1‑151 (MQ=255)
    aTAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTaaaa                                                                                                                                                    >  1:3067485/1‑151 (MQ=255)
    aTAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAAAGTAACAATATGCCCATTTTGTTACTTTaaaa                                                                                                                                                    >  1:72264/1‑151 (MQ=255)
    aTAGTGTTTTAACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTaaaa                                                                                                                                                    >  1:441685/1‑151 (MQ=255)
     tAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACtttggcaa                                                                                                                                                   <  1:285067/151‑6 (MQ=255)
         gtTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAAtata                                                                                                                                               <  1:2649823/151‑1 (MQ=255)
          ttttCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATAc                                                                                                                                              <  1:74893/151‑1 (MQ=255)
            ttCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACtt                                                                                                                                            >  1:1685180/1‑151 (MQ=255)
              cacaCCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCg                                                                                                                                          <  1:2734718/151‑1 (MQ=255)
                   cAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATg                                                                                                                                     >  1:1002388/1‑151 (MQ=255)
                    aGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGa                                                                                                                                    <  1:2027642/151‑1 (MQ=255)
                     gCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGat                                                                                                                                   >  1:2469933/1‑151 (MQ=255)
                      ctctctAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGata                                                                                                                                  <  1:1469590/151‑1 (MQ=255)
                         tctAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAttt                                                                                                                               >  1:239450/1‑151 (MQ=255)
                          ctAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAtttt                                                                                                                              >  1:2110603/1‑151 (MQ=255)
                           tAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAttttt                                                                                                                             >  1:2953165/1‑151 (MQ=255)
                            aGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAtttttt                                                                                                                            >  1:146136/1‑151 (MQ=255)
                               tttGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAttttttttt                                                                                                                         <  1:2210073/151‑2 (MQ=255)
                                  gCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAtttttttttcct                                                                                                                      <  1:497340/151‑5 (MQ=255)
                                   ccgattaaTCCTTCAACGAACTTAGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAtttttttttcctg                                                                                                                     <  1:3313939/145‑6 (MQ=255)
                                    cGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGc                                                                                                                    <  1:540778/151‑1 (MQ=255)
                                     gACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCa                                                                                                                   >  1:2472125/1‑151 (MQ=255)
                                        cAATCCTTCAACGAACTTGGTTTTTAAGGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCatat                                                                                                                <  1:2332933/151‑1 (MQ=255)
                                        cAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCatat                                                                                                                <  1:1860742/151‑1 (MQ=255)
                                        cAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCatat                                                                                                                >  1:2254316/1‑151 (MQ=255)
                                          aTCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATAttt                                                                                                              <  1:2314025/151‑1 (MQ=255)
                                              ttCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTaaa                                                                                                          <  1:1338917/151‑1 (MQ=255)
                                                cAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAAtt                                                                                                        <  1:40508/151‑1 (MQ=255)
                                                  aCGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAAtttt                                                                                                      <  1:674061/151‑1 (MQ=255)
                                                   cGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAAttttt                                                                                                     >  1:208470/1‑151 (MQ=255)
                                                     aaCTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAAttttttt                                                                                                   >  1:819794/1‑150 (MQ=255)
                                                     aaCTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTta                                                                                                   >  1:3398994/1‑151 (MQ=255)
                                                        ttGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTataa                                                                                                <  1:2837583/151‑1 (MQ=255)
                                                          ggTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTataaaa                                                                                              <  1:1010813/151‑1 (MQ=255)
                                                           gTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTataaaat                                                                                             <  1:2622524/151‑1 (MQ=255)
                                                            tttttAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTataaaata                                                                                            >  1:3175043/1‑151 (MQ=255)
                                                                tAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAaataaata                                                                                        <  1:889320/151‑1 (MQ=255)
                                                                tAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAaataaata                                                                                        <  1:1402098/151‑1 (MQ=255)
                                                                tAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAaataaata                                                                                        <  1:447365/151‑1 (MQ=255)
                                                                 aaaGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAataaataa                                                                                       <  1:299524/151‑1 (MQ=255)
                                                                   aGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAataata                                                                                     >  1:2428195/1‑151 (MQ=255)
                                                                    gTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAc                                                                                    >  1:1441028/1‑151 (MQ=255)
                                                                    gTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAc                                                                                    >  1:1393889/1‑151 (MQ=255)
                                                                      ttATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAccc                                                                                  <  1:2148615/151‑1 (MQ=255)
                                                                      ttATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAccc                                                                                  >  1:359357/1‑151 (MQ=255)
                                                                      ttATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTT‑ACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAcccc                                                                                 >  1:345366/1‑151 (MQ=255)
                                                                        atataAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAccccc                                                                                >  1:85924/1‑151 (MQ=255)
                                                                         tataAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCa                                                                               <  1:322263/151‑1 (MQ=255)
                                                                          ataAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCaa                                                                              >  1:1603060/1‑151 (MQ=255)
                                                                           taAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCaaa                                                                             <  1:540135/151‑1 (MQ=255)
                                                                           taAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCaaa                                                                             >  1:1049639/1‑151 (MQ=255)
                                                                            aaaCACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCCAAc                                                                            >  1:298030/1‑151 (MQ=255)
                                                                            aaaCACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAAc                                                                            >  1:1669437/1‑151 (MQ=255)
                                                                              acacTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCa                                                                          <  1:3266509/151‑1 (MQ=255)
                                                                              acacTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCa                                                                          >  1:1114479/1‑151 (MQ=255)
                                                                               cacTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCAt                                                                         >  1:1749853/1‑151 (MQ=255)
                                                                                 cTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCAttt                                                                       <  1:2388430/151‑1 (MQ=255)
                                                                                   aaCTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGc                                                                     <  1:2750146/151‑1 (MQ=255)
                                                                                   aaCTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGc                                                                     >  1:1165830/1‑151 (MQ=255)
                                                                                    aCTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCt                                                                    <  1:327704/151‑1 (MQ=255)
                                                                                    aCTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCt                                                                    <  1:3270829/151‑1 (MQ=255)
                                                                                    aCTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCt                                                                    <  1:2351966/151‑1 (MQ=255)
                                                                                      tCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTg                                                                  <  1:2554211/151‑1 (MQ=255)
                                                                                       cAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGa                                                                 >  1:2709793/1‑151 (MQ=255)
                                                                                         gTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGAtt                                                               <  1:1361340/151‑1 (MQ=255)
                                                                                         gTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGAtt                                                               >  1:762601/1‑151 (MQ=255)
                                                                                           aTTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGt                                                             >  1:1220198/1‑151 (MQ=255)
                                                                                                tAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTggg                                                        <  1:345323/151‑1 (MQ=255)
                                                                                                     tGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGttt                                                   >  1:77706/1‑151 (MQ=255)
                                                                                                        cGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTa                                                <  1:924166/151‑1 (MQ=255)
                                                                                                        aaaaattcctgttttttaAAGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTa                                                <  1:2166907/136‑1 (MQ=37)
                                                                                                         gATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTAc                                               >  1:181403/1‑151 (MQ=255)
                                                                                                         aaaattcctgttttttaAAGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTAc                                               <  1:2810967/137‑1 (MQ=25)
                                                                                                          aTTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTAcc                                              >  1:766553/1‑151 (MQ=255)
                                                                                                                 aCTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTaa                                       <  1:2488006/151‑1 (MQ=255)
                                                                                                                  cTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTaaa                                      >  1:2888543/1‑151 (MQ=255)
                                                                                                                   tttATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTaaaa                                     >  1:172082/1‑151 (MQ=255)
                                                                                                                    ttattaATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAAc                                    >  1:2756216/1‑151 (MQ=255)
                                                                                                                       ttaATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGa                                 >  1:1251048/1‑151 (MQ=255)
                                                                                                                       ttaATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGa                                 <  1:1893251/151‑1 (MQ=255)
                                                                                                                        taATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACCTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGaa                                >  1:270966/1‑151 (MQ=255)
                                                                                                                         aaTGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAAc                               <  1:1373110/151‑1 (MQ=255)
                                                                                                                         aaTGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAAc                               >  1:2425735/1‑151 (MQ=255)
                                                                                                                           tGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCa                             >  1:2093427/1‑151 (MQ=255)
                                                                                                                            gTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCaa                            <  1:843678/151‑1 (MQ=255)
                                                                                                                             tAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCaaa                           <  1:657601/151‑1 (MQ=255)
                                                                                                                                     tGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAg                   >  1:613478/1‑151 (MQ=255)
                                                                                                                                        ccATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTc                >  1:3037217/1‑151 (MQ=255)
                                                                                                                                           ttttGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTc             >  1:2662326/1‑151 (MQ=255)
                                                                                                                                               gTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCtttt         <  1:1102173/151‑1 (MQ=255)
                                                                                                                                               gTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCtttt         <  1:3125705/151‑1 (MQ=255)
                                                                                                                                                ttACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCttttt        >  1:570620/1‑151 (MQ=255)
                                                                                                                                                  aCTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTgg      >  1:839972/1‑151 (MQ=255)
                                                                                                                                                    tttAAAAATATACTTCGACATGCTATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATATTCCCAAACCATTTGCTTGATTGTTTGTGTGTTTTTACCGTTCTAAAACTGAACCAAAGAATACATTTCGTCTTTTTGGTc    >  1:1287691/1‑151 (MQ=38)
                                                                                                                                                    tttAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTc    <  1:3217728/151‑1 (MQ=255)
                                                                                                                                                    tttAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTAGAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTc    <  1:2774771/151‑1 (MQ=255)
                                                                                                                                                     ttAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTcc   >  1:1633519/1‑151 (MQ=255)
                                                                                                                                                     ttAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTcc   <  1:515198/151‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
CTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTT‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCT  >  CP002416/3474021‑3474320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.