New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP002416 3474145 =164 (1.130)19 (0.160) 19/246 10.8 12.0% intergenic (‑711/+135) Clo1313_2959/Clo1313_2961 CheW protein/integrase family protein
?CP002416 3475077 = 144 (1.210)intergenic (‑237/‑164) Clo1313_2961/Clo1313_2962 integrase family protein/transcriptional regulator, AraC family
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 168 total aligned reads displayed.

AACTTATTTCCTACTTGCGGCCCAACCTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTT‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAA  >  CP002416/3473995‑3474294
                                                                                                                                                      |                                                                                                                                                      
  cTTATTTCCTACTTGCGGCCCAACCTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTa                                                                                                                                                      >  1:2650115/1‑151 (MQ=255)
     aTTTCCTACTTGCGGCCCAACCTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACa                                                                                                                                                   <  1:1169755/151‑1 (MQ=255)
           tACTTGCGGCCCAACCTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATGTTTCACTTTATTAATGTAACAATATGc                                                                                                                                             >  1:2400982/1‑151 (MQ=255)
               tGCGGCCCAACCTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCAt                                                                                                                                         <  1:1420861/151‑1 (MQ=255)
                 cGGCCCAACCTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCAttt                                                                                                                                       >  1:724379/1‑151 (MQ=255)
                 cGGCCCAACCTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCAttt                                                                                                                                       <  1:2354759/151‑1 (MQ=255)
                  ggCCCAACCTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCAtttt                                                                                                                                      >  1:1013190/1‑151 (MQ=255)
                     ccAACCTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGtt                                                                                                                                   <  1:100469/151‑1 (MQ=255)
                     ccAACCTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGtt                                                                                                                                   <  1:1645364/151‑1 (MQ=255)
                      cAACCTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTa                                                                                                                                  <  1:2897512/151‑1 (MQ=255)
                       aaCCTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTAc                                                                                                                                 >  1:1905029/1‑151 (MQ=255)
                         ccTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACtt                                                                                                                               <  1:3419551/151‑1 (MQ=255)
                          cTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACttt                                                                                                                              >  1:1230530/1‑151 (MQ=255)
                           ttCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATCTAACAATATGCCCATTTTGTTACTTTa                                                                                                                             >  1:3148280/1‑151 (MQ=255)
                             cATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTaaa                                                                                                                           >  1:1156808/1‑151 (MQ=255)
                              aTAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTaaaa                                                                                                                          >  1:1485635/1‑151 (MQ=255)
                              aTAGTGTTTTAACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTaaaa                                                                                                                          >  1:441685/1‑151 (MQ=255)
                               tAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACtttggcaa                                                                                                                         <  1:285067/151‑6 (MQ=255)
                                    ttttCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATAc                                                                                                                    <  1:74893/151‑1 (MQ=255)
                                            ccAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACAt                                                                                                            <  1:2735621/151‑1 (MQ=255)
                                             cAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATg                                                                                                           >  1:1002388/1‑151 (MQ=255)
                                               gCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGat                                                                                                         >  1:2469933/1‑151 (MQ=255)
                                                  ctctAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAtt                                                                                                      <  1:844857/151‑1 (MQ=255)
                                                    ctAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAtttt                                                                                                    >  1:2110603/1‑151 (MQ=255)
                                                    ctAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAtttt                                                                                                    >  1:1102174/1‑151 (MQ=255)
                                                     tAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAttttt                                                                                                   <  1:2828684/151‑1 (MQ=255)
                                                      aGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAtttttt                                                                                                  >  1:146136/1‑151 (MQ=255)
                                                         tttGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAttttttttt                                                                                               <  1:2210073/151‑2 (MQ=255)
                                                            gCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAtttttttttcct                                                                                            <  1:497340/151‑5 (MQ=255)
                                                             ccgattaaTCCTTCAACGAACTTAGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAtttttttttcctg                                                                                           <  1:3313939/145‑6 (MQ=255)
                                                             ccGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAtttttttttcctg                                                                                           >  1:2774772/1‑146 (MQ=255)
                                                               gACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCa                                                                                         >  1:2472125/1‑151 (MQ=255)
                                                                aCCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCat                                                                                        >  1:293662/1‑151 (MQ=255)
                                                                  cAATCCTTCAACGAACTTGGTTTTTAAGGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCatat                                                                                      <  1:2332933/151‑1 (MQ=255)
                                                                  cAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCatat                                                                                      >  1:312996/1‑151 (MQ=255)
                                                                  cAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCatat                                                                                      <  1:1877782/151‑1 (MQ=255)
                                                                  cAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCatat                                                                                      <  1:1860742/151‑1 (MQ=255)
                                                                  cAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCatat                                                                                      <  1:528150/151‑1 (MQ=255)
                                                                   aaTCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATAtt                                                                                     >  1:759359/1‑151 (MQ=255)
                                                                   aaTCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATAtt                                                                                     <  1:818142/151‑1 (MQ=255)
                                                                    aTCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATAttt                                                                                    <  1:2314025/151‑1 (MQ=255)
                                                                        ttCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTaaa                                                                                <  1:1338917/151‑1 (MQ=255)
                                                                          cAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAAtt                                                                              <  1:40508/151‑1 (MQ=255)
                                                                            aCGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAAtttt                                                                            <  1:674061/151‑1 (MQ=255)
                                                                             cGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAAttttt                                                                           >  1:208470/1‑151 (MQ=255)
                                                                               aaCTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTta                                                                         >  1:3398994/1‑151 (MQ=255)
                                                                                aCTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTtat                                                                        <  1:2389915/151‑1 (MQ=255)
                                                                                  ttGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTataa                                                                      <  1:2837583/151‑1 (MQ=255)
                                                                                     gTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTataaaat                                                                   <  1:2622524/151‑1 (MQ=255)
                                                                                     gTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTataaaat                                                                   >  1:107773/1‑151 (MQ=255)
                                                                                     gTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTataaaat                                                                   >  1:268910/1‑151 (MQ=255)
                                                                                          tAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAaataaata                                                              <  1:692593/151‑1 (MQ=255)
                                                                                          tAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAaataaata                                                              <  1:447365/151‑1 (MQ=255)
                                                                                          tAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAaataaata                                                              <  1:1402098/151‑1 (MQ=255)
                                                                                          tAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAaataaata                                                              <  1:889320/151‑1 (MQ=255)
                                                                                           aaaGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAataaataa                                                             <  1:2283619/151‑1 (MQ=255)
                                                                                           aaaGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAataaataa                                                             <  1:3042379/151‑1 (MQ=255)
                                                                                           aaaGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAataaataa                                                             <  1:299524/151‑1 (MQ=255)
                                                                                             aGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAataata                                                           >  1:2428195/1‑151 (MQ=255)
                                                                                              gTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAc                                                          >  1:1393889/1‑151 (MQ=255)
                                                                                              gTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAc                                                          >  1:3472234/1‑151 (MQ=255)
                                                                                              gTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAc                                                          >  1:1441028/1‑151 (MQ=255)
                                                                                               tttATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAcc                                                         >  1:2353078/1‑151 (MQ=255)
                                                                                                ttATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAccc                                                        >  1:359357/1‑151 (MQ=255)
                                                                                                ttATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAccc                                                        <  1:2148615/151‑1 (MQ=255)
                                                                                                  atataAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAccccc                                                      >  1:85924/1‑151 (MQ=255)
                                                                                                   tataAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCa                                                     <  1:322263/151‑1 (MQ=255)
                                                                                                   tataAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCa                                                     <  1:3094243/151‑1 (MQ=255)
                                                                                                    ataAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCaa                                                    >  1:1603060/1‑151 (MQ=255)
                                                                                                     taAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCaaa                                                   <  1:540135/151‑1 (MQ=255)
                                                                                                      aaaCACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCCAAc                                                  >  1:298030/1‑151 (MQ=255)
                                                                                                        acacTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCa                                                <  1:3266509/151‑1 (MQ=255)
                                                                                                             aaCTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGc                                           >  1:1165830/1‑151 (MQ=255)
                                                                                                             aaCTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGc                                           <  1:2750146/151‑1 (MQ=255)
                                                                                                             aaCTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCATGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGc                                           >  1:1699179/1‑151 (MQ=255)
                                                                                                              aCTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCt                                          <  1:327704/151‑1 (MQ=255)
                                                                                                                tCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTg                                        <  1:2554211/151‑1 (MQ=255)
                                                                                                                 cAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGa                                       >  1:2709793/1‑151 (MQ=255)
                                                                                                                  aGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGAt                                      >  1:2424295/1‑151 (MQ=255)
                                                                                                                   gTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGAtt                                     <  1:1361340/151‑1 (MQ=255)
                                                                                                                     aTTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGt                                   >  1:1220198/1‑151 (MQ=255)
                                                                                                                     aTTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGt                                   <  1:1461248/151‑1 (MQ=255)
                                                                                                                      tttCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGtt                                  >  1:3389247/1‑151 (MQ=255)
                                                                                                                      tttCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGtt                                  >  1:1362451/1‑151 (MQ=255)
                                                                                                                          tAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTggg                              <  1:345323/151‑1 (MQ=255)
                                                                                                                          tAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTggg                              >  1:3235442/1‑151 (MQ=255)
                                                                                                                               tGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGttt                         >  1:77706/1‑151 (MQ=255)
                                                                                                                                  cGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTa                      <  1:924166/151‑1 (MQ=255)
                                                                                                                                  cGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTa                      <  1:1612558/151‑1 (MQ=255)
                                                                                                                                   gATTTGTCACTTTAATAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACTCCCAAACCATTTGCTTGATTGCTTGGGGGTTTTTAc                     >  1:549840/1‑151 (MQ=255)
                                                                                                                                    aTTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTAcc                    >  1:766553/1‑151 (MQ=255)
                                                                                                                                           aCTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTaa             >  1:1674172/1‑151 (MQ=255)
                                                                                                                                            gttttttaAAGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTaaa            >  1:3200191/6‑151 (MQ=255)
                                                                                                                                             tttATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTaaaa           >  1:172082/1‑151 (MQ=255)
                                                                                                                                              ttattaATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAAc          >  1:3275093/1‑151 (MQ=255)
                                                                                                                                               tattaATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACt         >  1:2156696/1‑151 (MQ=255)
                                                                                                                                                 ttaATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGa       >  1:1251048/1‑151 (MQ=255)
                                                                                                                                                     tGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCa   >  1:2093427/1‑151 (MQ=255)
                                                                                                                                                     tGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCa   >  1:181258/1‑151 (MQ=255)
                                                                                                                                                      gTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCaa  <  1:843678/151‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
AACTTATTTCCTACTTGCGGCCCAACCTTCATAGTGTTTTCACACCAGCTCTCTAGCTTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTT‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAA  >  CP002416/3473995‑3474294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.