New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP002416 = 44825673 (0.500)83 (0.730) 69/234 1.1 53.9% intergenic (‑418/‑1071) Clo1313_0403/Clo1313_0405 lysyl‑tRNA synthetase/CheW protein
?CP002416 = 448661 85 (0.750)intergenic (‑823/‑666) Clo1313_0403/Clo1313_0405 lysyl‑tRNA synthetase/CheW protein

Only 100 of 318 total aligned reads displayed.

ACATGTAATTGAGTTGAGAGTATTATCTCATATGTACTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACTTAATTGTTTTGCAGCTTCTTTTAATACTCGGTAGTTCTC  >  CP002416/448106‑448405
                                                                                                                                                      |                                                                                                                                                     
cttgagctttgtcagttttggtcttcgcaaaaatatgttttgatactaattattacaattttaatttcaatttacataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTa                                                                                                                                                       >  1:652339‑M1/119‑151 (MQ=255)
    gTAATTGAGTTGAGAGTATTATCTCATATGTACTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaa                                                                                                                                                   <  1:2855996‑M1/151‑5 (MQ=255)
     gctttgtcagttttggtcttcgcaaaaatatgttttgatactaattattacaattttaatttcaatttacataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAAtt                                                                                                                                                  >  1:3394432‑M1/114‑151 (MQ=255)
     gctttgtcagttttggtcttcgcaaaaatatgttttgatactaattattacaattttaatttcaatttacataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAAtt                                                                                                                                                  >  1:1365136‑M1/114‑151 (MQ=255)
         tgagttgagAGTATTATCTCATATGTACTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatat                                                                                                                                              >  1:2778497‑M1/1‑142 (MQ=255)
         tgagttgagAGTATTATCTCATATGTACTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATAc                                                                                                                                              >  1:1995829/1‑151 (MQ=255)
         tgagttgagAGTATTATCTCATATGTACTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATAc                                                                                                                                              >  1:854464/1‑151 (MQ=255)
             ttgagAGTATTATCTCATATGTACTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCg                                                                                                                                          >  1:473740/1‑151 (MQ=255)
              tgagAGTATTATCTCATATGTACTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaa                                                                                                                                         >  1:3170403‑M1/1‑137 (MQ=255)
                tttggtcttcgcaaaaatatgttttgatactaattattacaattttaatttcaatttacataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACg                                                                                                                                       >  1:1224198‑M1/103‑151 (MQ=255)
                  agTATTATCTCATATGTACTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCa                                                                                                                                     >  1:1865604/1‑151 (MQ=255)
                    tattatCTCATATGTACTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagccttt                                                                                                                                   <  1:739981‑M1/151‑21 (MQ=255)
                    tattatCTCATATGTACTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAat                                                                                                                                   >  1:448864/1‑151 (MQ=255)
                         tctcATATGTACTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAAtattta                                                                                                                              <  1:2956562/151‑1 (MQ=255)
                          ctcATATGTACTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAAtatttat                                                                                                                             >  1:1731428/1‑151 (MQ=255)
                            cATATGTACTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaa                                                                                                                           >  1:1950696‑M1/1‑123 (MQ=255)
                            cATATGTACTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATatttattt                                                                                                                           <  1:952268/151‑1 (MQ=255)
                                  atgttttgatactaattattacaattttaatttcaatttacataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTg                                                                                                                     <  1:3238036‑M1/67‑1 (MQ=255)
                                   tgttttgatactaattattacaattttaatttcaatttacataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGc                                                                                                                    <  1:421003‑M1/68‑1 (MQ=255)
                                   aCTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGc                                                                                                                    <  1:520773/151‑1 (MQ=255)
                                            actaattattacaattttaatttcaatttacataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGc                                                                                                           >  1:1855943‑M1/75‑151 (MQ=255)
                                             aGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaata                                                                                                          <  1:1823851‑M1/151‑46 (MQ=255)
                                              taattattacaattttaatttcaatttacataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCAt                                                                                                         <  1:2293012‑M1/79‑1 (MQ=255)
                                              taattattacaattttaatttcaatttacataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCAt                                                                                                         >  1:2756760‑M1/73‑151 (MQ=255)
                                                attattacaattttaatttcaatttacataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCAttt                                                                                                       >  1:604146‑M1/71‑151 (MQ=255)
                                                attattacaattttaatttcaatttacataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCAttt                                                                                                       <  1:2441159‑M1/81‑1 (MQ=255)
                                                 aaTTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCAtttt                                                                                                      <  1:708771/151‑1 (MQ=255)
                                                   ttAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacat                                                                                                    <  1:1764581‑M1/151‑52 (MQ=255)
                                                    tAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacatt                                                                                                   <  1:2275161‑M1/151‑53 (MQ=255)
                                                     tacaattttaatttcaatttacataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTtat                                                                                                  >  1:2875962‑M1/66‑151 (MQ=255)
                                                     aGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattt                                                                                                  <  1:2952304‑M1/151‑54 (MQ=255)
                                                     aGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTtat                                                                                                  <  1:406021/151‑1 (MQ=255)
                                                      gCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTtata                                                                                                 >  1:2359451/1‑151 (MQ=255)
                                                        aattttaatttcaatttacataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTataaa                                                                                               <  1:3435230‑M1/89‑1 (MQ=255)
                                                         gCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttt                                                                                              >  1:1607553‑M1/1‑94 (MQ=255)
                                                         attttaatttcaatttacataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTataaaa                                                                                              >  1:1429958‑M1/62‑151 (MQ=255)
                                                          ttttaatttcaatttacataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTataaaat                                                                                             <  1:2461523‑M1/91‑1 (MQ=255)
                                                              tttAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAaaataaat                                                                                         <  1:1540393/151‑1 (MQ=255)
                                                                tAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaatttt                                                                                       <  1:2812385‑M1/151‑65 (MQ=255)
                                                                tAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaatttt                                                                                       >  1:1110850‑M1/1‑87 (MQ=255)
                                                                tAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAataaataa                                                                                       >  1:224538/1‑151 (MQ=255)
                                                                    aaGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAg                                                                                   >  1:897983/1‑151 (MQ=255)
                                                                    aaGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAg                                                                                   >  1:131993/1‑151 (MQ=255)
                                                                        tgtgtgATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCa                                                                               <  1:2326548/151‑1 (MQ=255)
                                                                         acataagtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCaa                                                                              <  1:2522334‑M1/106‑1 (MQ=255)
                                                                              agtactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTAt                                                                         <  1:2574897‑M1/111‑1 (MQ=255)
                                                                                tactaattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTAttt                                                                       <  1:1331085‑M1/113‑1 (MQ=255)
                                                                                  tACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgt                                                                     >  1:532542‑M1/1‑69 (MQ=255)
                                                                                   taattatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGt                                                                    >  1:1500548‑M1/36‑151 (MQ=255)
                                                                                   aCTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGt                                                                    >  1:1801487/1‑151 (MQ=255)
                                                                                       tttttAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatctt                                                                <  1:2924761‑M1/151‑88 (MQ=255)
                                                                                       tttttAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGat                                                                <  1:2543457/151‑1 (MQ=255)
                                                                                       tttttAATGGAAGGAATAATTTTACTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGCCGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTAAAACTATTTAGCTGat                                                                >  1:1397097/1‑151 (MQ=37)
                                                                                       tatatatttttttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGat                                                                <  1:3010145‑M1/120‑1 (MQ=255)
                                                                                        ttttAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGatt                                                               >  1:1417504/1‑151 (MQ=255)
                                                                                           tAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatctttttt                                                            <  1:788562‑M1/151‑92 (MQ=255)
                                                                                             aTGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTg                                                          >  1:3075540/1‑151 (MQ=255)
                                                                                              tGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatctttttttta                                                         <  1:2210996‑M1/151‑95 (MQ=255)
                                                                                               ggaaggaaTAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaagagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaa                                                        >  1:1514703‑M1/1‑56 (MQ=255)
                                                                                                  ttatatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCt                                                     <  1:1657754‑M1/131‑1 (MQ=255)
                                                                                                   ggaaTAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaata                                                    <  1:332731‑M1/151‑100 (MQ=255)
                                                                                                    gaaTAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCttt                                                   >  1:616907/1‑151 (MQ=255)
                                                                                                    atatggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCttt                                                   >  1:374123‑M1/19‑151 (MQ=255)
                                                                                                      atggtccttccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTtat                                                 <  1:268321‑M1/135‑1 (MQ=255)
                                                                                                      ataatTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatattt                                                 >  1:1167888‑M1/1‑49 (MQ=255)
                                                                                                       taatTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTtata                                                <  1:1033909/151‑1 (MQ=255)
                                                                                                         atTTTTCTGAAAATTAATGTAACAATATACTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattatttatataaaaaataatgtatcttttttttaaaatatttata                                              <  1:3478329‑M1/151‑106 (MQ=255)
                                                                                                         atTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttata                                              >  1:845158‑M1/1‑46 (MQ=255)
                                                                                                            ttCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttataaaa                                           <  1:1159392‑M1/151‑109 (MQ=255)
                                                                                                            ttCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttataaaa                                           <  1:26292‑M1/151‑109 (MQ=255)
                                                                                                              ccTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACt                                         <  1:3277599/151‑1 (MQ=255)
                                                                                                               ccactttTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACtt                                        <  1:3051532‑M1/144‑1 (MQ=255)
                                                                                                                  aaaaTTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACTTAAt                                     >  1:2028777/1‑151 (MQ=255)
                                                                                                                   aaaTTAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttataaaaattttgt                                    <  1:48428‑M1/151‑116 (MQ=255)
                                                                                                                      ttAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttataaaaattttgtata                                 <  1:763623‑M1/151‑119 (MQ=255)
                                                                                                                      TTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACTTAATTGtt                                 >  1:1568702‑M1/1‑151 (MQ=255)
                                                                                                                       tAATGTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttataaaaattttgtataa                                >  1:1461850‑M1/1‑32 (MQ=255)
                                                                                                                       TAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACTTAATTGttt                                >  1:1898560‑M1/1‑151 (MQ=255)
                                                                                                                           gTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttataaaaattttgtataaacag                            <  1:2584293‑M1/151‑124 (MQ=255)
                                                                                                                           gTAACAATATGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttataaaaattttgtataaacag                            >  1:2053581‑M1/1‑28 (MQ=255)
                                                                                                                            TAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACTTAATTGTTTTGCAg                           <  1:2527950‑M1/151‑1 (MQ=255)
                                                                                                                               CAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACTTAATTGTTTTGCAGctt                        >  1:392157‑M1/1‑151 (MQ=255)
                                                                                                                                 atatGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttataaaaattttgtataaacagctgtaa                      <  1:2695558‑M1/151‑130 (MQ=255)
                                                                                                                                  TATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACTTAATTGTTTTGCAGcttctt                     >  1:2495035‑M1/1‑151 (MQ=255)
                                                                                                                                   atGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttataaaaattttgtataaacagctgtaatg                    <  1:3030245‑M1/151‑132 (MQ=255)
                                                                                                                                   atGCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttataaaaattttgtataaacagctgtaatg                    <  1:1289380‑M1/151‑132 (MQ=255)
                                                                                                                                    TGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACTTAATTGTTTTGCAGCTTCtttt                   >  1:3364471‑M1/1‑151 (MQ=255)
                                                                                                                                     gCTCATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatatgaaaaataatgtatcttttttttaaaatatttataaaaattttgtataaacagctgtaatgta                  >  1:1907586‑M1/1‑18 (MQ=255)
                                                                                                                                      CTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACTTAATTGTTTTGCAGCTTCTTTTaa                 >  1:2182468‑M1/1‑151 (MQ=255)
                                                                                                                                       TCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACTTAATTGTTTTGCAGCTTCTTTTAAt                <  1:1677714‑M1/151‑1 (MQ=255)
                                                                                                                                        cATTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttataaaaattttgtataaacagctgtaatgtagaa               <  1:2500861‑M1/151‑137 (MQ=255)
                                                                                                                                         aTTTTGTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttataaaaattttgtataaacagctgtaatgtagaac              >  1:1479004‑M1/1‑14 (MQ=255)
                                                                                                                                         ATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACTTAATTGTTTTGCAGCTTCTTTTAATAc              <  1:3424351‑M1/151‑1 (MQ=255)
                                                                                                                                            TTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACTTAATTGTTTTGCAGCTTCTTTTAATACTCg           <  1:319966‑M1/151‑1 (MQ=255)
                                                                                                                                              gTTACTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttataaaaattttgtataaacagctgtaatctagaacttatt         <  1:2102594‑M1/151‑143 (MQ=255)
                                                                                                                                                TACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACTTAATTGTTTTGCAGCTTCTTTTAATACTCGGTAg       <  1:55684‑M1/151‑1 (MQ=255)
                                                                                                                                                 aCTTTAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttataaaaattttgtataaacagctgtaatgtagaacttatttgg      <  1:240952‑M1/151‑146 (MQ=255)
                                                                                                                                                   tttAttaatatattgaaagcctttatattcaaaagattcaacactaatagtacattttttttaattttttatataaaaaataatgtatcttttttttaaaatatttataaaaattttgtataaacagctgtaatgtagaacttatttggaa    <  1:1090394‑M1/151‑148 (MQ=255)
                                                                                                                                                   TTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTAATACCATACTTAATTGTTTTGAAGCTTCTTTTATTACTCGGTAGTtc    <  1:2718804‑M1/151‑1 (MQ=255)
                                                                                                                                                     TAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACTTAATTGTTTTGCAGCTTCTTTTAATACTCGGTAGTtctc  <  1:2865528‑M1/151‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                     
ACATGTAATTGAGTTGAGAGTATTATCTCATATGTACTATAAGGCAGGGAATTAGCTGCATATTTAACAAGTTGTGTGATGATACTCTTTTTAATGGAAGGAATAATTTTCCTGAAAATTAATGTAACAATATGCTCATTTTGTTACTTTAAAATTATACTTCGACGCAATATTTATTTTTCCTGCATATTTTGCATTTTTTATAAAATAAATAAAAAGCTCAAACTATTTAGTTGATTATTTGGAGCTTTATACCATACTTAATTGTTTTGCAGCTTCTTTTAATACTCGGTAGTTCTC  >  CP002416/448106‑448405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.