| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP002416 | = 103801 | 101 (0.690) | 10 (0.100) +GCCGAGCCCGACACCGACGCCGGAGCCGGAACCGAGTCCGACAT |
8/212 | 14.4 | 11.9% | coding (2030/3180 nt) | Clo1313_0090 | S‑layer domain‑containing protein |
| ? | CP002416 | 103816 = | 109 (0.750) | coding (2045/3180 nt) | Clo1313_0090 | S‑layer domain‑containing protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP002416/103652‑103801‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGACGCCGAC > CP002416/103816‑103825 |||||||||||||||||||||||||||||||||||||||||||| ACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGAAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAG > 1:130587/1‑151 ccgacACCAGACCCGGAGCCGACCTCGACGCCGACCCCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAAAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGC < 1:1978488/146‑1 CCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGCAGCCGACACCGACGCCGACACCGGAACCGGAGCCGAGCCCGACCCCGCCGCCGGGACCGGAGC > 1:396063/1‑151 GGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCG < 1:1469307/151‑1 CAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCC < 1:2484695/151‑1 CCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACAC < 1:3284900/151‑1 CGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGACCCCGACACCGACGCC > 1:1100953/1‑151 GACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCG > 1:228407/1‑151 CATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGA < 1:844016/151‑1 CGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACCTCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAACCGGAGCCGAGCCCGACCCCGACGCCGGAGCC > 1:2861016/1‑151 GACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGACCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGACCCCGACCCCGACGCCGGAGCCG > 1:2406111/1‑151 ACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGAGACCGACGCCGGCGCCGG > 1:2474219/1‑151 ACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGG < 1:2150048/151‑1 CGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCAACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGA > 1:2956370/1‑151 CCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGACCCGACACCGACGCCGACACCGGAACCGGCGCCGAGCCCGACACCGACGCCGGAACCGGCCCCGAGCCCGACACCGACGCCGGCGCCGGAAC > 1:1926792/1‑151 CCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGACCCGACACCGACGCCGACACCGGAACCGGACCCGAGCCCGACACCGACGCCGGAGCCGGACCCGAGCCCGACACCGACGCCGGAGCCGGAAC > 1:766480/1‑151 cgccgCCGGAACCAGAGCCGCAGCCGACACCGACGCCGCCACCGGAACCAGAGCCGGAGCCGACATCGACGCCGACACCGGACCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAACC < 1:453325/146‑1 ACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAACCGAGT > 1:1221678/1‑151 CCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAACCGAGgc > 1:3054343/1‑149 GAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGACCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAACCGAGTCCGA > 1:2230971/1‑151 ACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAACCGAGACCGACc > 1:2005684/1‑150 CCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAACCGAGACCGACAT > 1:2645641/1‑151 CAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAACCGAGACCGACAcc > 1:1935696/1‑149 gGAACCGAAGCCGACATCGACGCCGACACCGGAACCAGAACCGGGGCCGACACCGACGCCGACGCCGGAACCGGGGCCGAGCCCGACACCGACGCCGGGGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAACCGAGTCCGACATCG < 1:2666867/150‑1 acagCCGGAGCCGACAACGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAACCGAGTCCGACATCG < 1:101627/147‑1 AGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAACCGAGTCCGACATCG > 1:1666591/1‑151 gacCCGGCGCCGACACCGACGCCGACACCGGAACCAAAGCCGGCGCCGACACCGACGCCGACCCCGGAACCGAAGCCGAGCCCGACACCGACGCCGGAGCCGGGGCCGAGCCCGACACCGACGCCGGAGCCGGAACCGAGTCCGACATCGA < 1:2275160/148‑1 aagCCGGGGCCGAGAACGACGCCGGCACCGGAACGAGAACCGGGGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGGCGCCGGAGCCGGAGCCGAGCGCGACACCGACGCCGGAGCCGGAACCGAGGCCGACATCGA < 1:2014767/148‑1 CCGGGGCCGACATCGACGCCGACCCCGGAACCAGAACCGGGGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAACCGAGTCCGACATCGACGC < 1:2766370/151‑1 CCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAACCGAGTCCGACATCGACGC > 1:2569043/1‑151 GGAGCCGACACCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGCGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAACCGAGTCCGACATCGACGCCG < 1:1883391/151‑1 GAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAACCGAGTCCGACATCGACGCCGA > 1:602683/1‑151 AGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGAGCCGAGCCCGACACCGACGCCGGCGCCGGAACCGAGTCCGACCTCGACGCCGAC > 1:2181027/1‑151 |||||||||||||||||||||||||||||||||||||||||||| ACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCAGAACCGGAGCCGACATCGACGCCGACACCGGAACCGGAGCCGAGCCCGACACCGACGCCGGAGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP002416/103652‑103801‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGACGCCGAC > CP002416/103816‑103825 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |