New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP002416	103707 =	103 (0.710)	16 (0.150) +GCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGC	14/226	11.9	17.3%	coding (1936/3180 nt)	Clo1313_0090	S‑layer domain‑containing protein
	?	CP002416	= 103801	100 (0.690)					coding (2030/3180 nt)	Clo1313_0090	S‑layer domain‑containing protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTGTCGGCGTCGGGCTTGGGCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP002416/103828‑103707 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGT  <  CP002416/103801‑103652                                                                                                                           |||||||||||||||||||||||||||||||||||||                                                                                                                                                       GGTGTCGGCGTCGGGCTTGGGCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGGTGTCGGCTCCGGTTCTGGTGCCGGCGTCGGCGTCGATGTCGGGCTCGGTTCCGGCTCCGGCGTCGGTGTCG                                                                                                                                                                >  1:136438/1‑151      CGGCGTCGGGCTTGGGCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGGCTCGGTTCCGGCGCCGGCGTCGGCGTCGGGCTC                                                                                                                                                           >  1:2177611/1‑151                                                CGGGCTCGGGTCCGGTTCGGGTGTCGGCGTCGGGGTCGGCGCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGGCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCC                                                                                                                 <  1:1314377/151‑1                                                 GGGCTCGGTGCCGGTTCCGGTGTCGGCGTCGGTGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGGCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCG                                                                                                                <  1:1130985/151‑1                                                    CTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCGGCGGTTCGGGTTCCGGTGTCGGCGTCGATGTCGGGCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTG                                                                                                             <  1:378922/151‑1                                                         tTCCGGTTCCGGGGTCGGCGTCGGTGTCGGCGCCGGTTCTGGTGCCGGTGTCGGCGTCGATGTCGGGCTCGGTTCCGGCGCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGC                                                                                                        <  1:253878/150‑1                                                          tcgggcggCGGTGTGGGCGTCGGTGTCGGCGACGGTTCTGGTGCCGGTGTCGGGGTCGATGTGGGGCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCG                                                                                                       <  1:874171/143‑1                                                                 ccggcgtgGGCGTCGATGTCGGGTCCGGTTGCGGTTCCGGTGTCGGCGTCGATCTCGGGCTCGGTTCCGGTTCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGT                                                                                                <  1:1227807/143‑1                                                                        gGGCGTCGATGTCGGCGCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGGCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCC                                                                                         <  1:2177071/150‑1                                                                                                 ggtgCCGGTGTCGGCGTCGGGGTCGGGCTCGGTTCCGGGGCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCG                                                                <  1:3230857/147‑1                                                                                                 GGTTCCGGTGTCGGCGTCGATGTCGGGCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCG                                                                <  1:2321733/151‑1                                                                                                      CGGTGTGGGCGTCGGGGTCGGGCTCGGTTCCGGGTCCGGCGTCGGGGTCGGGCTCGGCTCCGGCGCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTC                                                           <  1:2749036/151‑1                                                                                                                 TCGATGTCGGCCTCGGTTCCGGCTCCGGCGTCGGTGTCGCGCTCGGCTCCGGCTCCGGCGCCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCCCCGGTTCTCGTTCCGGTGCCGGCGTCGTTCTCGGCCCCGGctt                                                >  1:2014767/1‑148                                                                                                                  cggTGTCGGGCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCT                                               <  1:3381837/148‑1                                                                                                                   ggTGTCGGTCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTG                                              <  1:1935696/149‑1                                                                                                                   ggTGTCGGGCTCGGTTCCGGGTCGGGCGTCGGTGTCGGGGTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGGTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTG                                              <  1:1755225/149‑1                                                                                                                    ATGTCGGTCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGG                                             <  1:2645641/151‑1                                                                                                                     gGTCGGTCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGT                                            <  1:2005684/150‑1                                                                                                                          gcCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGG                                       <  1:3054343/149‑1                                                                                                                               GGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGGTCCGGTGTCGGCGTCGATGTCGGCTCCGGCTCTGGTTCCGGTGGCGGCGTCGGTGTCGGCTGCGGCTCTGGTTCCGGcggcg                                  >  1:453325/1‑146                                                                                                                                GTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGGTCCGGCTCCGGCGTCGGTGTCGGGCTCGGGTCCGGTTCCGGTGTCGGCGTCGGTGTCGGGTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGG                                 <  1:766480/151‑1                                                                                                                                GTTCCGGCGCCGGCGTCGGTGTCGGGCTCGGGGCCGGTTCCGGCGTCGGTGTCGGGCTCGGCGCCGGTTCCGGTGTCGGCGTCGGTGTCGGGTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGG                                 <  1:1926792/151‑1                                                                                                                                  TCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTTGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCG                               <  1:2956370/151‑1                                                                                                                                   CCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGT                              >  1:2150048/1‑151                                                                                                                                   CCGGCGCCGGCGTCGGTCTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGT                              <  1:2474219/151‑1                                                                                                                                    CGGCTCCGGCGTCGGGGTCGGGGTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGGTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTC                             <  1:2406111/151‑1                                                                                                                                     GGCTCCGGCGTCGGGGTCGGGCTCGGCTCCGGTTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGAGGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCG                            <  1:2861016/151‑1                                                                                                                                        TCCGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATG                         >  1:844016/1‑151                                                                                                                                          CGGCGTCGGTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTC                       <  1:228407/151‑1                                                                                                                                           GGCGTCGGTGTCGGGGTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCG                      <  1:1100953/151‑1                                                                                                                                                  GTGTCGGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGG               >  1:3284900/1‑151                                                                                                                                                       GGGCTCGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTG          >  1:2484695/1‑151                                                                                                                                                            CGGCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCC     >  1:1469307/1‑151                                                                                                                                                              GCTCCGGTCCCGGCGGCGGGGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGGTGTCGGCTGCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGG   <  1:396063/151‑1                                                                                                                                                              GCTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTTTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGGGTCGGCGTCGAGGTCGGCTCCGGGTCTGGTgtcgg   >  1:1978488/1‑146                                                                                                                                                               CTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTTCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGT  <  1:130587/151‑1                                                                                                                           |||||||||||||||||||||||||||||||||||||                                                                                                                                                       GGTGTCGGCGTCGGGCTTGGGCTCGGTTCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP002416/103828‑103707 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCCGGCTCCGGCGTCGGTGTCGGGCTCGGCTCCGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGTGTCGGCGTCGATGTCGGCTCCGGTTCTGGTTCCGGT  <  CP002416/103801‑103652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.