BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP002416	3,474,201	(T)_8→9	intergenic (‑767/+79)	Clo1313_2959 ← / ← Clo1313_2961	CheW protein/integrase family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP002416	3,474,201	1	.	T	100.0%	685.0 / NA	173	intergenic (‑767/+79)	Clo1313_2959/Clo1313_2961	CheW protein/integrase family protein
Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (94/79); total (94/79)

Only 100 of 196 total aligned reads displayed.

TTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTT‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCTATATAACGCAGAGTTATCCG  >  CP002416/3474052‑3474351

tttGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAttttttttt                                                                                                                                                        <  1:2210073/151‑2 (MQ=255)

   gCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAtttttttttcct                                                                                                                                                     <  1:497340/151‑5 (MQ=255)

   gCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAtttttttttcct                                                                                                                                                     >  1:139969/1‑147 (MQ=255)

    ccgattaaTCCTTCAACGAACTTAGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAtttttttttcctg                                                                                                                                                    <  1:3313939/145‑6 (MQ=255)

    ccGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATAtttttttttcctg                                                                                                                                                    >  1:2774772/1‑146 (MQ=255)

     cGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGc                                                                                                                                                   <  1:540778/151‑1 (MQ=255)

       aCCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCat                                                                                                                                                 >  1:293662/1‑151 (MQ=255)

        ccAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCata                                                                                                                                                <  1:1156809/151‑1 (MQ=255)

         cAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCatat                                                                                                                                               <  1:1860742/151‑1 (MQ=255)

          aaTCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATAtt                                                                                                                                              >  1:759359/1‑151 (MQ=255)

               ttCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTaaa                                                                                                                                         <  1:1338917/151‑1 (MQ=255)

                 cAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAAtt                                                                                                                                       <  1:40508/151‑1 (MQ=255)

                    cGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAAttttt                                                                                                                                    >  1:208470/1‑151 (MQ=255)

                      aaCTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAAttttttt                                                                                                                                  >  1:819794/1‑150 (MQ=255)

                           ggTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTataaaa                                                                                                                             <  1:740007/151‑1 (MQ=255)

                           ggTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTataaaa                                                                                                                             <  1:1010813/151‑1 (MQ=255)

                            gTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTataaaat                                                                                                                            <  1:2622524/151‑1 (MQ=255)

                             tttttAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTataaaata                                                                                                                           >  1:3175043/1‑151 (MQ=255)

                                ttAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAaaataaat                                                                                                                        <  1:1428936/151‑1 (MQ=255)

                                 tAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAaataaata                                                                                                                       <  1:447365/151‑1 (MQ=255)

                                 tAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAaataaata                                                                                                                       <  1:692593/151‑1 (MQ=255)

                                  aaaGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAataaataa                                                                                                                      <  1:299524/151‑1 (MQ=255)

                                  aaaGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAataaataa                                                                                                                      <  1:3042379/151‑1 (MQ=255)

                                     gTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAc                                                                                                                   >  1:3472234/1‑151 (MQ=255)

                                     gTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAc                                                                                                                   >  1:1441028/1‑151 (MQ=255)

                                       ttATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAccc                                                                                                                 <  1:2148615/151‑1 (MQ=255)

                                       ttATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTT‑ACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAcccc                                                                                                                >  1:345366/1‑151 (MQ=255)

                                         atataAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATAccccc                                                                                                               >  1:85924/1‑151 (MQ=255)

                                           ataAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCaa                                                                                                             >  1:1603060/1‑151 (MQ=255)

                                                  cTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCAttt                                                                                                      <  1:2388430/151‑1 (MQ=255)

                                                    aaCTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGc                                                                                                    <  1:2750146/151‑1 (MQ=255)

                                                    aaCTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCATGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGc                                                                                                    >  1:1699179/1‑151 (MQ=255)

                                                     aCTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCt                                                                                                   <  1:3270829/151‑1 (MQ=255)

                                                     aCTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCt                                                                                                   <  1:327704/151‑1 (MQ=255)

                                                     aCTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCt                                                                                                   <  1:2351966/151‑1 (MQ=255)

                                                        cAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCTCCAAACCATTTGCTTGa                                                                                                >  1:2597829/1‑151 (MQ=255)

                                                         aGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGAt                                                                                               >  1:2424295/1‑151 (MQ=255)

                                                          gTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGAtt                                                                                              <  1:1361340/151‑1 (MQ=255)

                                                            aTTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGt                                                                                            >  1:1220198/1‑151 (MQ=255)

                                                                 tAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTggg                                                                                       >  1:3235442/1‑151 (MQ=255)

                                                                 tAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTggg                                                                                       <  1:345323/151‑1 (MQ=255)

                                                                      tGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGttt                                                                                  >  1:77706/1‑151 (MQ=255)

                                                                         cGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTa                                                                               <  1:924166/151‑1 (MQ=255)

                                                                         aaaaattcctgttttttaAAGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTa                                                                               <  1:2166907/136‑1 (MQ=37)

                                                                          aaaattcctgttttttaAAGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTAc                                                                              <  1:2810967/137‑1 (MQ=25)

                                                                           aTTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTAcc                                                                             >  1:766553/1‑151 (MQ=255)

                                                                             ttttCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGt                                                                           >  1:89095/1‑151 (MQ=255)

                                                                                     ttattaATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAAc                                                                   >  1:2756216/1‑151 (MQ=255)

                                                                                        ttaATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGa                                                                <  1:1893251/151‑1 (MQ=255)

                                                                                         taATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACCTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGaa                                                               >  1:270966/1‑151 (MQ=255)

                                                                                          aaTGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAAc                                                              <  1:1373110/151‑1 (MQ=255)

                                                                                            tGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCa                                                            >  1:181258/1‑151 (MQ=255)

                                                                                            tGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCa                                                            >  1:2103360/1‑151 (MQ=255)

                                                                                              tAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCaaa                                                          <  1:657601/151‑1 (MQ=255)

                                                                                                 cAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGaa                                                       <  1:1321732/151‑1 (MQ=255)

                                                                                                     atGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACa                                                   <  1:2041063/151‑1 (MQ=255)

                                                                                                      tGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAg                                                  >  1:613478/1‑151 (MQ=255)

                                                                                                           aTTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGt                                             >  1:2712113/1‑151 (MQ=255)

                                                                                                            ttttGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTc                                            >  1:2662326/1‑151 (MQ=255)

                                                                                                            ttttGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTc                                            <  1:1734883/151‑1 (MQ=255)

                                                                                                               tGTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCttt                                         >  1:247683/1‑151 (MQ=255)

                                                                                                                gTTACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCtttt                                        <  1:3125705/151‑1 (MQ=255)

                                                                                                                 ttACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCttttt                                       >  1:2634473/1‑151 (MQ=255)

                                                                                                                 ttACTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCttttt                                       >  1:570620/1‑151 (MQ=255)

                                                                                                                   aCTTTAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTgg                                     >  1:839972/1‑151 (MQ=255)

                                                                                                                     tttAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTc                                   >  1:103062/1‑151 (MQ=255)

                                                                                                                     tttAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTc                                   <  1:3217728/151‑1 (MQ=255)

                                                                                                                      ttAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTcc                                  >  1:1633519/1‑151 (MQ=255)

                                                                                                                      ttAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTcc                                  <  1:515198/151‑1 (MQ=255)

                                                                                                                       tAAAAATATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCt                                 <  1:2472124/151‑1 (MQ=255)

                                                                                                                        aaaaaTATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTg                                >  1:150225/1‑151 (MQ=255)

                                                                                                                        aaaaaTATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTg                                <  1:1084495/151‑1 (MQ=255)

                                                                                                                        aaaaaTATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTg                                <  1:2427468/151‑1 (MQ=255)

                                                                                                                        aaaaaTATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTg                                <  1:1192097/151‑1 (MQ=255)

                                                                                                                         aaaaTATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGa                               >  1:1906264/1‑151 (MQ=255)

                                                                                                                         aaaaTATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGa                               <  1:359356/151‑1 (MQ=255)

                                                                                                                           aaTATACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGAtt                             >  1:1109911/1‑151 (MQ=255)

                                                                                                                            atatACTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGAttt                            <  1:865599/151‑1 (MQ=255)

                                                                                                                             tataCTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTa                           <  1:1956799/151‑1 (MQ=255)

                                                                                                                             tataCTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTa                           >  1:543700/1‑151 (MQ=255)

                                                                                                                              ataCTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTac                          <  1:1674171/151‑1 (MQ=255)

                                                                                                                                 cTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACAcc                       >  1:2072025/1‑151 (MQ=255)

                                                                                                                                 cTTCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACAcc                       >  1:2883571/1‑151 (MQ=255)

                                                                                                                                  ttCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGTGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCt                      <  1:2705882/151‑1 (MQ=255)

                                                                                                                                   tCGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCta                     >  1:2539904/1‑151 (MQ=255)

                                                                                                                                    cGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCtat                    >  1:2303578/1‑151 (MQ=255)

                                                                                                                                    cGACATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCtat                    >  1:1251318/1‑151 (MQ=255)

                                                                                                                                      aCATGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCtatat                  <  1:2192403/151‑1 (MQ=255)

                                                                                                                                        aTGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCTATATaa                <  1:2326570/151‑1 (MQ=255)

                                                                                                                                         tGATATTTTTTTTTCCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCTATATAAc               >  1:2976408/1‑151 (MQ=255)

                                                                                                                                         gatattttttttt‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCTATATAACg              >  1:2235511/6‑151 (MQ=255)

                                                                                                                                         gatattttttttt‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCTATATAACg              <  1:2428196/146‑1 (MQ=255)

                                                                                                                                            attttttttt‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCTATATAACGCag           >  1:531530/3‑151 (MQ=255)

                                                                                                                                             ttttttttt‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCTATATAACGCaga          <  1:3395523/150‑1 (MQ=255)

                                                                                                                                               ttttttt‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCTATATAACGCAGAGt        <  1:2353079/151‑1 (MQ=255)

                                                                                                                                               ttttttt‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCTATATAACGCAGAGt        <  1:146135/151‑1 (MQ=255)

                                                                                                                                                tttttt‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCTATATAACGCAGAGtt       >  1:2271743/1‑151 (MQ=255)

                                                                                                                                                tttttt‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCTATATAACGCAGAGtt       <  1:1049640/151‑1 (MQ=255)

                                                                                                                                                tttttt‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCTATATAACGCAGAGtt       <  1:2847423/151‑1 (MQ=255)

                                                                                                                                                   ttt‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCTATATAACGCAGAGTTATc    >  1:2961396/1‑151 (MQ=255)

TTTGCCGACCAATCCTTCAACGAACTTGGTTTTTAAAGTTTATATAAACACTAACTCAGTATTTCTAATATGTCGATTTTTCACTTTATTAATGTAACAATATGCCCATTTTGTTACTTTAAAAATATACTTCGACATGATATTTTTTTT‑CCTGCATATTTTAAATTTTTTATAAAATAAATAATACCCCCAAACCATTTGCTTGATTGTTTGGGGGTTTTTACCGTTCTAAAACTGAACCAAAGAATACAGTTCGTCTTTTTGGTCCTGATTTACACCTATATAACGCAGAGTTATCCG  >  CP002416/3474052‑3474351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`