| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP002416 | 2,704,920 | (T)7→8 | intergenic (‑1451/+836) | Clo1313_2294 ← / ← Clo1313_2296 | two component transcriptional regulator, winged helix family/flavin reductase domain protein FMN‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP002416 | 2,704,920 | 1 | . | T | 99.0% | 196.5 / ‑3.2 | 102 | intergenic (‑1451/+836) | Clo1313_2294/Clo1313_2296 | two component transcriptional regulator, winged helix family/flavin reductase domain protein FMN‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (55/46); total (56/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.55e-01 | |||||||||||
Only 100 of 108 total aligned reads displayed.
TCATAATCCCTTGAGTCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTT‑AAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAGTCGTACAATTTCATCCTCAAGACGACGGGTTTTCTTC > CP002416/2704771‑2705046 | tcATAATCCCTTGAGTCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCtttttttt < 1:3260720/151‑2 (MQ=21)tcATAATCCCTTGAGTCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCtttttttt < 1:1981797/151‑2 (MQ=21)tcATAATCCCTTGAGTCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCtttttttt < 1:1057294/151‑2 (MQ=21) aTAATCCCTTGAGTCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCttttttttaa > 1:1302501/1‑148 (MQ=18) tAATCCCTTGAGTCAATCATATCAAGAATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCttttttttaag > 1:3233256/1‑147 (MQ=12) tCCCTTGAGTCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAGCAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAgaga < 1:648691/151‑1 (MQ=9) tCCCTTGAGTCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAgaga < 1:2272532/151‑1 (MQ=14) tCCCTTGAGTCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAgaga > 1:938058/1‑151 (MQ=14) ccTTGAGTCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGAtt > 1:804761/1‑151 (MQ=14) ttGAGTCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGc < 1:1380529/151‑1 (MQ=14) tGAGTCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCa > 1:1693079/1‑151 (MQ=14) tGAGTCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCa < 1:1831994/151‑1 (MQ=14) aGTCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCaaa > 1:2226360/1‑151 (MQ=14) tCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACt > 1:1980592/1‑151 (MQ=14) tCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACt < 1:641232/151‑1 (MQ=14) caaacATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAACTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTg < 1:3274101/147‑1 (MQ=255) aaTCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGt > 1:2249453/1‑151 (MQ=14) aTCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTa > 1:2489131/1‑151 (MQ=14) aTCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTa > 1:1059645/1‑151 (MQ=14) tCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTAc > 1:1502510/1‑151 (MQ=14) atCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACtttt > 1:2395097/1‑151 (MQ=14) tCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTa < 1:1788170/151‑1 (MQ=14) tCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTa > 1:736570/1‑151 (MQ=14) aaGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTAcc < 1:2653974/151‑1 (MQ=14) gTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGa > 1:2884361/1‑151 (MQ=14) gTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGa > 1:1182221/1‑151 (MQ=14) tATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGat < 1:2234661/151‑1 (MQ=14) tATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGat < 1:2002097/151‑1 (MQ=14) tATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGat < 1:3392480/151‑1 (MQ=14) tttGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGatat < 1:2833976/151‑1 (MQ=14) cGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCacaac > 1:1732441/1‑151 (MQ=14) cGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCacaac > 1:3015400/1‑151 (MQ=14) gTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCacaaca > 1:278513/1‑151 (MQ=14) aaaaaTATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACAtt < 1:2086489/151‑1 (MQ=14) aaaaaTATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACAtt > 1:3322502/1‑151 (MQ=14) aaaaTATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACAttt < 1:2304754/151‑1 (MQ=14) aaaaTATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACAttt > 1:2006842/1‑151 (MQ=14) aaaTATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCGAACTGTACTTTTACCGATATCCACAACAtttt > 1:3405383/1‑151 (MQ=9) aaaTATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACAtttt < 1:1425838/151‑1 (MQ=14) aaTATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTc < 1:1294929/151‑1 (MQ=14) atatCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTcc > 1:2490766/1‑151 (MQ=14) tctatcATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCttt < 1:1184460/151‑1 (MQ=14) tctatcATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCttt < 1:80338/151‑1 (MQ=14) ctatcATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTa < 1:1025110/151‑1 (MQ=14) ctatcATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTa < 1:2245507/151‑1 (MQ=14) tcATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTagag > 1:3383946/1‑151 (MQ=14) cATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGc > 1:1217273/1‑151 (MQ=14) tAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCtt < 1:122752/151‑1 (MQ=14) aaTTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCttt < 1:1877987/151‑1 (MQ=14) aaTTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACATTTACCGATATCCACAACATTTTCCTTTAGAGCttt < 1:2517219/151‑1 (MQ=9) aTTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCtttt < 1:3455883/151‑1 (MQ=14) ttGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTg < 1:2582758/151‑1 (MQ=14) tGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGa > 1:479706/1‑151 (MQ=14) tGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGa < 1:3157713/151‑1 (MQ=14) tGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGa > 1:2056057/1‑151 (MQ=14) gTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGAt < 1:479705/151‑1 (MQ=14) gTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGAt < 1:1030387/151‑1 (MQ=14) gTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGAt > 1:1977948/1‑151 (MQ=14) tCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGAtgc > 1:728116/1‑151 (MQ=14) cATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGAtgctg < 1:1000722/151‑1 (MQ=14) aTAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAGCAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGAtgctgc > 1:2112255/1‑151 (MQ=9) aTAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGAtgctgc > 1:2461244/1‑151 (MQ=14) ttttCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGa < 1:3323207/151‑1 (MQ=14) tttCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGaa > 1:1181044/1‑151 (MQ=14) tttCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGaa > 1:1303073/1‑151 (MQ=14) ttCGCTTTTTAATAGCAAAATCATCAATGCAATCAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAAc > 1:112308/1‑151 (MQ=9) tCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACt < 1:955234/151‑1 (MQ=14) tCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACt < 1:3086949/151‑1 (MQ=14) cGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTg < 1:3289459/151‑1 (MQ=14) gCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGc > 1:20826/1‑151 (MQ=14) tttttAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCaa > 1:3339143/1‑151 (MQ=14) tttttAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCaa > 1:1058613/1‑151 (MQ=14) ttttAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAAt < 1:2829575/151‑1 (MQ=14) tttAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAAtt < 1:960091/151‑1 (MQ=14) tAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTa > 1:1053860/1‑151 (MQ=14) tAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTa > 1:1603825/1‑151 (MQ=14) tAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTa < 1:2419012/151‑1 (MQ=14) aaTAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTAt > 1:1690405/1‑151 (MQ=14) tAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTg > 1:1918075/1‑151 (MQ=14) gCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGAc > 1:1866948/1‑151 (MQ=14) cAAAATCATCAATGCAAACAGCTGTTATTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACa < 1:2384736/151‑1 (MQ=9) cAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACa < 1:2639453/151‑1 (MQ=14) cAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACa < 1:72724/151‑1 (MQ=14) cAAAATCATCAATGCAAACAGCTGTTACTGTCTCTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACa > 1:153397/1‑151 (MQ=9) aaaaTCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAg > 1:2787192/1‑151 (MQ=14) aaaaTCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAg > 1:1367180/1‑151 (MQ=14) aaaTCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTTTTTCTTTTTTTTAAGAGTTTCCAACTTTTACTTTTCCCGATTTCCCCACCTTTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTTTTGCCAGt > 1:573088/1‑151 (MQ=2) tcatcaATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAGTCGt < 1:628728/151‑1 (MQ=14) catcaATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAGTCGTa > 1:3447690/1‑151 (MQ=14) atcaATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAGTCGTAc > 1:2278604/1‑151 (MQ=14) caATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAGTCGTACaa > 1:1412331/1‑151 (MQ=14) caATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAGTCGTACaa > 1:323919/1‑151 (MQ=14) aaTGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAGTCGTACAAt > 1:2726497/1‑151 (MQ=14) aTGCAAACAGCTGTTACTGTCTTCTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAGTCGTACAAtt > 1:2031514/1‑151 (MQ=9) tGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAGTCGTACAAttt < 1:514804/151‑1 (MQ=14) tGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAGTCGTACAAtta < 1:1071066/151‑2 (MQ=14) gCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAATCTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAGTCGTACAATTTc > 1:1114379/1‑151 (MQ=9) gCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAGTCGTACAATTTc < 1:2490765/151‑1 (MQ=14) cAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTTTAAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAGTCGTACAATTTCa > 1:2636129/1‑151 (MQ=14) gTCAACAACCAGTGTTTCTTTTTTT‑AAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAGTCGTACAATTTCATCCTCAAGACGACGGGTTttcttc > 1:3333181/1‑151 (MQ=11) | TCATAATCCCTTGAGTCAATCATATCAAGTATTTGATGCGTAAAAATATCTATCATAATTGTTCCATAGCTTTTTCGCTTTTTAATAGCAAAATCATCAATGCAAACAGCTGTTACTGTCTTTTTGTCAACAACCGGTGTTTCTTTTTTT‑AAGAGATTGCAAACTGTACTTTTACCGATATCCACAACATTTTCCTTTAGAGCTTTTGATGCTGCAACGGAACTGCAATTTATTGACAGTCGTACAATTTCATCCTCAAGACGACGGGTTTTCTTC > CP002416/2704771‑2705046 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |