BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP002416	1,271,521	(A)_8→9	intergenic (+2205/‑2037)	Clo1313_1060 → / → Clo1313_1065	Hedgehog/intein hint domain protein/Domain of unknown function DUF1910

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP002416	1,271,521	1	.	A	100.0%	514.9 / NA	128	intergenic (+2205/‑2037)	Clo1313_1060/Clo1313_1065	Hedgehog/intein hint domain protein/Domain of unknown function DUF1910
Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (66/62); total (66/62)

Only 100 of 140 total aligned reads displayed.

TAGGCTAAACAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAA‑GATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTTATAGCTAAATACTCTTTAGGTAGTCATCCGAATGA  >  CP002416/1271371‑1271671

taGGCTAAACAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGaaaaaaaa                                                                                                                                                         >  1:1212776/1‑151 (MQ=255)

 aGGCTAAACAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGaaaaaaaaa                                                                                                                                                        >  1:1773947/1‑150 (MQ=255)

   gCTAAACAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGaaaaaaaaaga                                                                                                                                                      <  1:89061/151‑4 (MQ=255)

    cTAAACAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGaaaaaaaaagat                                                                                                                                                     >  1:854095/1‑147 (MQ=255)

     tAAACAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGaaaaaaaaagatt                                                                                                                                                    >  1:2455529/1‑146 (MQ=255)

      aaaCAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGatta                                                                                                                                                   >  1:2516152/1‑151 (MQ=255)

      aaaCAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGatta                                                                                                                                                   <  1:1470089/151‑1 (MQ=255)

       aaCAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGattat                                                                                                                                                  <  1:2612695/151‑1 (MQ=255)

        aCAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGattatt                                                                                                                                                 >  1:2833417/1‑151 (MQ=255)

        aCAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGattatt                                                                                                                                                 <  1:929765/151‑1 (MQ=255)

        aCAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGA‑GCAATTTGTGAAAGAAAAAAAAAGAttatta                                                                                                                                                <  1:1954758/151‑1 (MQ=255)

             aaTGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCt                                                                                                                                            >  1:3037416/1‑151 (MQ=255)

              aTGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTg                                                                                                                                           <  1:1453951/151‑1 (MQ=255)

                  tGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAg                                                                                                                                       >  1:2136636/1‑151 (MQ=255)

                     aataatTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAgatg                                                                                                                                    <  1:3233956/151‑1 (MQ=255)

                       taatTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAgatgat                                                                                                                                  >  1:2215993/1‑151 (MQ=255)

                        aatTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGata                                                                                                                                 >  1:1423484/1‑151 (MQ=255)

                        aatTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGata                                                                                                                                 <  1:1616221/151‑1 (MQ=255)

                        aatTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGata                                                                                                                                 >  1:1765691/1‑151 (MQ=255)

                        aatTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGata                                                                                                                                 >  1:1754612/1‑151 (MQ=255)

                                   ggCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAGAGGGc                                                                                                                      >  1:1809007/1‑151 (MQ=255)

                                     ccATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGACAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCAt                                                                                                                    <  1:2872095/151‑1 (MQ=255)

                                     ccATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCAt                                                                                                                    >  1:918772/1‑151 (MQ=255)

                                     ccATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCAt                                                                                                                    >  1:60393/1‑151 (MQ=255)

                                      cATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATa                                                                                                                   <  1:3449213/151‑1 (MQ=255)

                                       ataaataaCAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATAc                                                                                                                  >  1:1147679/1‑151 (MQ=255)

                                        taaataaCAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACa                                                                                                                 >  1:1377451/1‑151 (MQ=255)

                                         aaataaCAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACaa                                                                                                                <  1:2937765/151‑1 (MQ=255)

                                           ataaCAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAg                                                                                                              <  1:3137625/151‑1 (MQ=255)

                                            taaCAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGa                                                                                                             >  1:1315643/1‑151 (MQ=255)

                                             aaCAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGat                                                                                                            <  1:3072003/151‑1 (MQ=255)

                                             aaCAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGat                                                                                                            <  1:1577017/151‑1 (MQ=255)

                                              aCAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGata                                                                                                           >  1:2797055/1‑151 (MQ=255)

                                              aCAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGata                                                                                                           >  1:689812/1‑151 (MQ=255)

                                                aaaTGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATc                                                                                                         >  1:27285/1‑151 (MQ=255)

                                                aaaTGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATc                                                                                                         >  1:1879267/1‑151 (MQ=255)

                                                 aaTGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATcc                                                                                                        >  1:3164092/1‑151 (MQ=255)

                                                    gAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCaaa                                                                                                     >  1:2321294/1‑151 (MQ=255)

                                                      aaaGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAg                                                                                                   <  1:2190337/151‑1 (MQ=255)

                                                        aGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGAc                                                                                                 >  1:1579231/1‑151 (MQ=255)

                                                           agaTGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAAt                                                                                              >  1:539142/1‑151 (MQ=255)

                                                                atgGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAg                                                                                         >  1:1313020/1‑151 (MQ=255)

                                                                atgGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAg                                                                                         >  1:1014095/1‑151 (MQ=255)

                                                                 tgGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGc                                                                                        >  1:1100890/1‑151 (MQ=255)

                                                                  ggTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCa                                                                                       >  1:1769927/1‑151 (MQ=255)

                                                                   gTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCAt                                                                                      <  1:3425435/151‑1 (MQ=255)

                                                                     aTGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATaa                                                                                    <  1:2902041/151‑1 (MQ=255)

                                                                       gagagaTCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAAtt                                                                                  <  1:1393847/151‑1 (MQ=255)

                                                                       gagagaTCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAAtt                                                                                  >  1:373480/1‑151 (MQ=255)

                                                                         gagaTCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTa                                                                                <  1:1690604/151‑1 (MQ=255)

                                                                           gaTCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATg                                                                              >  1:2653676/1‑151 (MQ=255)

                                                                             tCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCt                                                                            >  1:2014252/1‑151 (MQ=255)

                                                                             tCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCt                                                                            >  1:2399838/1‑151 (MQ=255)

                                                                                gTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACa                                                                         >  1:141077/1‑151 (MQ=255)

                                                                                gTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACa                                                                         >  1:718972/1‑151 (MQ=255)

                                                                                    tGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACAtata                                                                     >  1:453315/1‑151 (MQ=255)

                                                                                     gCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATag                                                                    >  1:1249941/1‑151 (MQ=255)

                                                                                      cAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATaga                                                                   <  1:2325587/151‑1 (MQ=255)

                                                                                       aGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATagag                                                                  >  1:3183307/1‑151 (MQ=255)

                                                                                        gTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAgg                                                                 >  1:2488561/1‑151 (MQ=255)

                                                                                          gAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGaa                                                               <  1:322334/151‑1 (MQ=255)

                                                                                           aaaGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAAt                                                              >  1:1674511/1‑151 (MQ=255)

                                                                                           aaaGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAAt                                                              >  1:2996487/1‑151 (MQ=255)

                                                                                               ttATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGttt                                                          >  1:1453432/1‑151 (MQ=255)

                                                                                               ttATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGttt                                                          >  1:495194/1‑151 (MQ=255)

                                                                                               ttATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGttt                                                          <  1:1886365/151‑1 (MQ=255)

                                                                                                tATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTa                                                         >  1:2599317/1‑151 (MQ=255)

                                                                                                tATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTa                                                         >  1:2733307/1‑151 (MQ=255)

                                                                                                tATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTa                                                         <  1:254232/151‑1 (MQ=255)

                                                                                                  tttGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATg                                                       <  1:2816760/151‑1 (MQ=255)

                                                                                                   ttGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGt                                                      >  1:2146925/1‑151 (MQ=255)

                                                                                                    tGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGta                                                     <  1:1218688/151‑1 (MQ=255)

                                                                                                     gTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGtat                                                    >  1:87137/1‑151 (MQ=255)

                                                                                                      ttAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGtata                                                   >  1:670868/1‑151 (MQ=255)

                                                                                                       tAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTataa                                                  <  1:1823388/151‑1 (MQ=255)

                                                                                                        aGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTataat                                                 <  1:639470/151‑1 (MQ=255)

                                                                                                         gAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTataata                                                >  1:764835/1‑151 (MQ=255)

                                                                                                         gAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTataata                                                <  1:211001/151‑1 (MQ=255)

                                                                                                           aaCAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACa                                              <  1:837881/151‑1 (MQ=255)

                                                                                                            aCAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAg                                             <  1:2272497/151‑1 (MQ=255)

                                                                                                                tAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAAt                                         >  1:2585242/1‑151 (MQ=255)

                                                                                                                 aGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATa                                        >  1:2632536/1‑151 (MQ=255)

                                                                                                                 aGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATa                                        <  1:2088866/151‑1 (MQ=255)

                                                                                                                   caTTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATTGAGGAATGTTTATGTATAATACAGAAATACt                                      <  1:2891838/150‑1 (MQ=255)

                                                                                                                   aatgtGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGAGTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACt                                      <  1:1748548/147‑1 (MQ=255)

                                                                                                                       tGACAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTtata                                  >  1:1898414/1‑151 (MQ=255)

                                                                                                                          cAAGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTTATAGCt                               <  1:689811/151‑1 (MQ=255)

                                                                                                                            aGGAAGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTTATAGCTaa                             >  1:2001584/1‑151 (MQ=255)

                                                                                                                               aaGCAATTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTTATAGCTAAATa                          >  1:3271364/1‑151 (MQ=255)

                                                                                                                                   aaTTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTTATAGCTAAATActct                      >  1:3421563/1‑151 (MQ=255)

                                                                                                                                   aaTTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTTATAGCTAAATActct                      <  1:138881/151‑1 (MQ=255)

                                                                                                                                   aaTTTGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTTATAGCTAAATActct                      <  1:206657/151‑1 (MQ=255)

                                                                                                                                      ttGTGAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGTAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGCAATGTTTATGTATAATACAGAAATACTTATATCTAAATACTCTTTa                   <  1:1147415/151‑1 (MQ=37)

                                                                                                                                       tgtgAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTTATAGCTAAATACTCTTTAg                  >  1:1042574/1‑151 (MQ=255)

                                                                                                                                       tgtgAAAGAAAAAAAAAGATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTTATAGCTAAATACTCTTTAg                  >  1:326085/1‑151 (MQ=255)

                                                                                                                                               aaaaaaaa‑GATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTTATAGCTAAATACTCTTTAGGTAGTCATc         >  1:2001740/1‑151 (MQ=255)

                                                                                                                                                  aaaaa‑GATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTTATAGCTAAATACTCTTTAGGTAGTCATCCGa      >  1:2398911/1‑151 (MQ=255)

                                                                                                                                                   aaaa‑GATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTTATAGCTAAATACTCTTTAGGTAGTCATCCGaa     >  1:2753187/1‑151 (MQ=255)

                                                                                                                                                    aaa‑GATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTTATAGCTAAATACTCTTTAGGTAGTCATCCGAAt    <  1:1973221/151‑1 (MQ=255)

                                                                                                                                                      a‑GATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTTATAGCTAAATACTCTTTAGGTAGTCATCCGAATGa  >  1:2423596/1‑151 (MQ=255)

TAGGCTAAACAGCAATGGTGAAATAATTGGATTCTGGCCATAAATAACAAATGAAAAGGAGATGATGGTATGAGAGATCCGTTATGCAGTGAAAGTTATTTGTTAGAAACAATAGAATTTGACAAGGAAGCAATTTGTGAAAGAAAAAAAA‑GATTATTATGCTGAAAGATGATATGGAAAAGGGCATACAAAGATATCCAAAAGACAATCAAAGCATAATTTATGCTACATATAGAGGAATGTTTATGTATAATACAGAAATACTTATAGCTAAATACTCTTTAGGTAGTCATCCGAATGA  >  CP002416/1271371‑1271671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`