BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP002416	1,918,850	(T)_7→6	intergenic (‑46/+203)	Clo1313_1644 ← / ← Clo1313_1645	hypothetical protein/DEAD/DEAH box helicase domain protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP002416	1,918,850	0	T	.	100.0%	595.9 / NA	131	intergenic (‑46/+203)	Clo1313_1644/Clo1313_1645	hypothetical protein/DEAD/DEAH box helicase domain protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (59/72); total (59/72)

Only 100 of 136 total aligned reads displayed.

GCTTCCGTGTAAGAAAACATCCTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTTTGGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTAAATGACAAGAAAATACTTTTCTTACT  >  CP002416/1918704‑1919000

gCTTCCGTGTAAGAAAACATCCTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAgg                                                                                                                                                   >  1:1094356/1‑151 (MQ=255)

 cTTCCGTGTAAGAAAACATCCTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAggg                                                                                                                                                  >  1:130361/1‑151 (MQ=255)

  ttCCGTGTAAGAAAACATCCTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGa                                                                                                                                                 >  1:1814479/1‑151 (MQ=255)

  ttCCGTGTAAGAAAACATCCTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGa                                                                                                                                                 >  1:3209855/1‑151 (MQ=255)

   tCCGTGTAAGAAAACATCCTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGat                                                                                                                                                >  1:2564377/1‑151 (MQ=255)

   tCCGTGTAAGAAAACATCCTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGat                                                                                                                                                <  1:2369343/151‑1 (MQ=255)

    ccGTGTAAGAAAACATCCTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGatt                                                                                                                                               >  1:1286022/1‑151 (MQ=255)

       tgtAAGAAAACATCCTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGattatt                                                                                                                                            >  1:116788/1‑151 (MQ=255)

          aaGAAAACATCCTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTAttttt                                                                                                                                         >  1:2903416/1‑151 (MQ=255)

             aaaaCATCCTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCtt                                                                                                                                      <  1:171106/151‑1 (MQ=255)

             aaaaCATCCTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCtt                                                                                                                                      <  1:3300912/151‑1 (MQ=255)

               aaCATCCTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCtttt                                                                                                                                    >  1:584752/1‑151 (MQ=255)

               aaCATCCTATTGCATATTGAACAAGGGTATCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATTATAATCATCTCCCTAATATATCTTTATTTTTATCCTCATAATTTTTT‑GGAGGAATTATTTTTCtgta                                                                                                                                    <  1:2788690/151‑4 (MQ=255)

                 cATCCTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTg                                                                                                                                  >  1:903575/1‑151 (MQ=255)

                     cTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGc                                                                                                                              <  1:2389914/151‑1 (MQ=255)

                     cTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGc                                                                                                                              <  1:1938397/151‑1 (MQ=255)

                      tATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCa                                                                                                                             >  1:521769/1‑151 (MQ=255)

                        ttGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCaaa                                                                                                                           >  1:272914/1‑151 (MQ=255)

                         tGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAAt                                                                                                                          >  1:1142950/1‑151 (MQ=255)

                         tGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAAt                                                                                                                          >  1:3017377/1‑151 (MQ=255)

                         tGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAAt                                                                                                                          <  1:2490737/151‑1 (MQ=255)

                          gCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATc                                                                                                                         <  1:2536701/151‑1 (MQ=255)

                           cATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCt                                                                                                                        <  1:1146763/151‑1 (MQ=255)

                            atatTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCtt                                                                                                                       >  1:1955613/1‑151 (MQ=255)

                             tatTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCttt                                                                                                                      <  1:3422766/151‑1 (MQ=255)

                              atTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCtttt                                                                                                                     <  1:445155/151‑1 (MQ=255)

                              atTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCtttt                                                                                                                     >  1:2020450/1‑151 (MQ=255)

                                    cAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTgg                                                                                                               <  1:1695147/151‑1 (MQ=255)

                                    cAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTgg                                                                                                               >  1:232742/1‑151 (MQ=255)

                                       gggTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGat                                                                                                            <  1:2106692/151‑1 (MQ=255)

                                        ggTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGata                                                                                                           <  1:3176708/151‑1 (MQ=255)

                                          tctaccAGTTTCCAAGCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGatata                                                                                                         <  1:2514946/147‑1 (MQ=255)

                                             cccAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATAttt                                                                                                      <  1:883782/151‑1 (MQ=255)

                                             cccAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATAttt                                                                                                      >  1:2469778/1‑151 (MQ=255)

                                                   ttCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCt                                                                                                >  1:1081058/1‑151 (MQ=255)

                                                     ccAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTa                                                                                              <  1:3015744/151‑1 (MQ=255)

                                                      cAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTaa                                                                                             <  1:3379968/151‑1 (MQ=255)

                                                      cAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTaa                                                                                             <  1:2332049/151‑1 (MQ=255)

                                                       aaTCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTaaa                                                                                            >  1:1828804/1‑151 (MQ=255)

                                                         tCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGa                                                                                          <  1:2984235/151‑1 (MQ=255)

                                                         tCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGa                                                                                          >  1:1895392/1‑151 (MQ=255)

                                                           aCTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGaaa                                                                                        >  1:853229/1‑151 (MQ=255)

                                                            cTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGaaaa                                                                                       <  1:2170847/151‑1 (MQ=255)

                                                            cTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGaaaa                                                                                       <  1:871759/151‑1 (MQ=255)

                                                             ttAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGaaaaa                                                                                      >  1:1371708/1‑151 (MQ=255)

                                                              tAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAAc                                                                                     <  1:2746953/151‑1 (MQ=255)

                                                              tAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAAc                                                                                     <  1:2960294/151‑1 (MQ=255)

                                                                 tGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTAt                                                                                  >  1:1564555/1‑151 (MQ=255)

                                                                  gggTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTAtt                                                                                 >  1:2113491/1‑151 (MQ=255)

                                                                  gggTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTAtt                                                                                 >  1:1561076/1‑151 (MQ=255)

                                                                  gggTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTAtt                                                                                 >  1:2660305/1‑151 (MQ=255)

                                                                  gggTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTATATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTAtt                                                                                 <  1:2765279/151‑1 (MQ=255)

                                                                   ggTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTAttt                                                                                >  1:2208546/1‑151 (MQ=255)

                                                                    gTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTAtttt                                                                               >  1:53069/1‑151 (MQ=255)

                                                                    gTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTAtttt                                                                               <  1:1911734/151‑1 (MQ=255)

                                                                      tttCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCt                                                                             <  1:107063/151‑1 (MQ=255)

                                                                       ttCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCtt                                                                            <  1:1295946/151‑1 (MQ=255)

                                                                         cTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTAt                                                                          >  1:1338444/1‑151 (MQ=255)

                                                                            tGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGc                                                                       >  1:614083/1‑151 (MQ=255)

                                                                                tttAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGa                                                                   <  1:3202050/151‑1 (MQ=255)

                                                                                tttAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGa                                                                   >  1:452294/1‑151 (MQ=255)

                                                                                 ttAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGaa                                                                  <  1:2349698/151‑1 (MQ=255)

                                                                                   aaTTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAAt                                                                >  1:2323219/1‑151 (MQ=255)

                                                                                     tttCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATta                                                              <  1:2543182/151‑1 (MQ=255)

                                                                                       tCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATtata                                                            <  1:2925110/151‑1 (MQ=255)

                                                                                         tACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATAtt                                                          <  1:235957/151‑1 (MQ=255)

                                                                                         tACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTGTTT‑GGAGGGATTATTTTTCTTTTGACCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTTAAATTATAtt                                                          <  1:2481736/151‑1 (MQ=255)

                                                                                          aCCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTg                                                         <  1:2816444/151‑1 (MQ=255)

                                                                                          aCCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTg                                                         >  1:238558/1‑151 (MQ=255)

                                                                                          aCCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTg                                                         <  1:2020451/151‑1 (MQ=255)

                                                                                            cGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGAt                                                       <  1:3464603/151‑1 (MQ=255)

                                                                                            cGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGAt                                                       >  1:3369115/1‑151 (MQ=255)

                                                                                                   atAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTtctct                                                >  1:3326206/1‑151 (MQ=255)

                                                                                                    tAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTtctctc                                               <  1:1094355/151‑1 (MQ=255)

                                                                                                     aaTCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTcc                                              <  1:1895391/151‑1 (MQ=255)

                                                                                                       tcatcTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCa                                            <  1:2660306/151‑1 (MQ=255)

                                                                                                        catcTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCaa                                           >  1:1787719/1‑151 (MQ=255)

                                                                                                         atcTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAAt                                          <  1:2011304/151‑1 (MQ=255)

                                                                                                           ctcacTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTTTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTa                                        >  1:2193193/5‑151 (MQ=255)

                                                                                                            tcCCTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAg                                       <  1:3206304/151‑1 (MQ=255)

                                                                                                              ccTAATATTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCt                                     >  1:318092/1‑151 (MQ=255)

                                                                                                                   tatTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCt                                <  1:2281090/151‑1 (MQ=255)

                                                                                                                    atTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCtt                               <  1:825368/151‑1 (MQ=255)

                                                                                                                    atTTCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCtt                               <  1:3422966/151‑1 (MQ=255)

                                                                                                                     tttCTTTATTTTTCTCCACATAATTTTTT‑GGGGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTg                              <  1:929148/151‑1 (MQ=255)

                                                                                                                     tttCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTg                              >  1:2861115/1‑151 (MQ=255)

                                                                                                                       tCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTa                            <  1:1508962/151‑1 (MQ=255)

                                                                                                                       tCTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTa                            <  1:785210/151‑1 (MQ=255)

                                                                                                                        cTTTATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTaa                           <  1:1732444/151‑1 (MQ=255)

                                                                                                                         tttATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTaaa                          >  1:1022424/1‑151 (MQ=255)

                                                                                                                          ttATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTAAAt                         <  1:2100530/151‑1 (MQ=255)

                                                                                                                          ttATTTTTCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTAAAt                         <  1:2783368/151‑1 (MQ=255)

                                                                                                                              ttttCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTAAATGACa                     >  1:3267887/1‑151 (MQ=255)

                                                                                                                              ttttCTCCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTAAATGACa                     <  1:362421/151‑1 (MQ=255)

                                                                                                                                 tctcCACATAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTAAATGACAAGa                  >  1:848077/1‑151 (MQ=255)

                                                                                                                                      acaTAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTAAATGACAAGAAAATa             <  1:2293650/151‑1 (MQ=255)

                                                                                                                                       caTAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTAAATGACAAGAAAATAc            <  1:2739144/151‑1 (MQ=255)

                                                                                                                                       caTAATTTTTT‑GGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTAAATGACAAGAAAATAc            <  1:1114819/151‑1 (MQ=255)

                                                                                                                                            attttttGGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTAAATGACAAGAAAATACtttt        >  1:979298/2‑151 (MQ=255)

                                                                                                                                                  tGGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTAAATGACAAGAAAATACTTTTCTTACt  >  1:3380315/1‑151 (MQ=255)

GCTTCCGTGTAAGAAAACATCCTATTGCATATTGAACAAGGGTCTCCCAGTTTCCAATCACTTAATGGGTTTTCTATGATTTTAATTTCTACCGTCATCATAATCATCTCCCTAATATTTCTTTATTTTTCTCCACATAATTTTTTTGGAGGGATTATTTTTCTTTTTGCCGCAAATCTTTTAAGTGGGATATATTTCACGCTTAAAGAAAAACTATTTTCTTATTGCTTGAAATTATATTGATCTTCTCTCCCAATTAGCTACCCTTGTAAATGACAAGAAAATACTTTTCTTACT  >  CP002416/1918704‑1919000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`