BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP002416	54,708	(T)_6→5	coding (911/927 nt)	Clo1313_0050 ←	primosome, DnaD subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP002416	54,708	0	T	.	100.0%	755.6 / NA	163	coding (911/927 nt)	Clo1313_0050	primosome, DnaD subunit
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (90/73); total (90/73)

Only 100 of 172 total aligned reads displayed.

GATTCGTATTCATTTATTATTATGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTTTGAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGATAATCAAAATTTGGGTTGG  >  CP002416/54564‑54858

 aTTCGTATTCATTTATTATTATGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGcaca                                                                                                                                                >  1:1764529/1‑151 (MQ=255)

  ttCGTATTCATTTATTATTATGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACaa                                                                                                                                               >  1:1128507/1‑151 (MQ=255)

    cGTATTCATTTATTATTATGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATg                                                                                                                                             <  1:2918049/151‑1 (MQ=255)

      tATTCATTTATTATTATGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGAc                                                                                                                                           <  1:3135227/151‑1 (MQ=255)

       aTTCATTTATTATTATGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACt                                                                                                                                          >  1:1747947/1‑151 (MQ=255)

       aTTCATTTATTATTATGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACt                                                                                                                                          <  1:712127/151‑1 (MQ=255)

         tCATTTATTATTATGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGa                                                                                                                                        <  1:3466561/151‑1 (MQ=255)

             ttattattaTGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCg                                                                                                                                    <  1:1834366/151‑1 (MQ=255)

              tattattatGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCgg                                                                                                                                   >  1:1169020/1‑151 (MQ=255)

              tattattatGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCgg                                                                                                                                   >  1:2002315/1‑151 (MQ=255)

                 tattatGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATa                                                                                                                                >  1:2190428/1‑151 (MQ=255)

                  attatGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATAc                                                                                                                               <  1:1271010/151‑1 (MQ=255)

                    tatGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACgg                                                                                                                             >  1:1004854/1‑151 (MQ=255)

                     atGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGa                                                                                                                            <  1:1945846/151‑1 (MQ=255)

                      tGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGaa                                                                                                                           >  1:2485555/1‑151 (MQ=255)

                       gCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAAc                                                                                                                          <  1:3237229/151‑1 (MQ=255)

                       gCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAAc                                                                                                                          <  1:889875/151‑1 (MQ=255)

                          gTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTg                                                                                                                       >  1:502883/1‑151 (MQ=255)

                               tatCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTg                                                                                                                  >  1:3289748/1‑151 (MQ=255)

                               tatCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTg                                                                                                                  <  1:1064411/151‑1 (MQ=255)

                                  cccTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGaa                                                                                                               >  1:2818694/1‑151 (MQ=255)

                                   ccTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAt                                                                                                              >  1:994748/1‑151 (MQ=255)

                                    cTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAtt                                                                                                             <  1:1532645/151‑1 (MQ=255)

                                    cTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAtt                                                                                                             <  1:2858715/151‑1 (MQ=255)

                                    cTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAtt                                                                                                             <  1:845673/151‑1 (MQ=255)

                                     tGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAttt                                                                                                            >  1:2615541/1‑151 (MQ=255)

                                        tCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAtttttc                                                                                                         >  1:635336/1‑151 (MQ=255)

                                        tCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAtttttc                                                                                                         <  1:1938798/151‑1 (MQ=255)

                                         cATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAtttttct                                                                                                        <  1:3132717/151‑1 (MQ=255)

                                         cATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAtttttct                                                                                                        >  1:2136045/1‑151 (MQ=255)

                                         cATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAtttttct                                                                                                        >  1:472887/1‑151 (MQ=255)

                                          aTGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAtttttctt                                                                                                       >  1:2346614/1‑151 (MQ=255)

                                          aTGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAtttttctt                                                                                                       <  1:3102680/151‑1 (MQ=255)

                                          aTGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAtttttctt                                                                                                       >  1:2499871/1‑151 (MQ=255)

                                           tgctgcCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAtttttcttt                                                                                                      >  1:389110/1‑151 (MQ=255)

                                             ctgcCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAtttttcttttt                                                                                                    >  1:3333691/1‑151 (MQ=255)

                                              tgcCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAtttttctttttc                                                                                                   >  1:2517911/1‑151 (MQ=255)

                                                      tGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGtgctgc                                                                                           >  1:535536/1‑151 (MQ=255)

                                                          tCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCa                                                                                       <  1:1917927/151‑1 (MQ=255)

                                                            ccATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATa                                                                                     >  1:1699453/1‑151 (MQ=255)

                                                             cATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTT‑GCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACg                                                                                   >  1:2992644/1‑151 (MQ=255)

                                                                 aCATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACa                                                                                >  1:824821/1‑151 (MQ=255)

                                                                   aTGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACatt                                                                              >  1:1652069/1‑151 (MQ=255)

                                                                      tAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACattatt                                                                           <  1:214592/151‑1 (MQ=255)

                                                                       aaGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTAttt                                                                          >  1:1642256/1‑151 (MQ=255)

                                                                             tATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCt                                                                    <  1:3324358/151‑1 (MQ=255)

                                                                               tGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTg                                                                  <  1:2844385/151‑1 (MQ=255)

                                                                                gCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTgg                                                                 <  1:1314362/151‑1 (MQ=255)

                                                                                 cATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGt                                                                >  1:335670/1‑151 (MQ=255)

                                                                                  aTTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTTCGTGCTGCCTCATACGACATTATTTCTTCCTTGGtt                                                               >  1:1477020/1‑151 (MQ=255)

                                                                                   ttttCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGttt                                                              <  1:1375038/151‑1 (MQ=255)

                                                                                    tttCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGtttt                                                             >  1:2658371/1‑151 (MQ=255)

                                                                                     ttCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTg                                                            >  1:167064/1‑151 (MQ=255)

                                                                                      tCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGa                                                           >  1:1097606/1‑151 (MQ=255)

                                                                                      tCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGa                                                           <  1:2063182/151‑1 (MQ=255)

                                                                                          aaaGACTGTTCAAATCTTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGCAAtt                                                       >  1:451995/1‑151 (MQ=255)

                                                                                          aaaGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAAtt                                                       >  1:2159947/1‑151 (MQ=255)

                                                                                           aaGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAAttg                                                      >  1:417210/1‑151 (MQ=255)

                                                                                           aaGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAAttg                                                      <  1:1981221/151‑1 (MQ=255)

                                                                                            aGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAAttgt                                                     >  1:1253957/1‑151 (MQ=255)

                                                                                              aCTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAAttgttg                                                   >  1:2052488/1‑151 (MQ=255)

                                                                                              aCTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAAttgttg                                                   <  1:2264467/151‑1 (MQ=255)

                                                                                               cTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAAttgttgt                                                  <  1:2075967/151‑1 (MQ=255)

                                                                                                tGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAAttgttgtt                                                 <  1:1116214/151‑1 (MQ=255)

                                                                                                 gTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAAttgttgttg                                                <  1:1057361/151‑1 (MQ=255)

                                                                                                 gTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAAttgttgttg                                                <  1:344423/151‑1 (MQ=255)

                                                                                                 gTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAAttgttgttg                                                >  1:750238/1‑151 (MQ=255)

                                                                                                  ttCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATtgttgttgt                                               <  1:913835/151‑1 (MQ=255)

                                                                                                   tCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTtgtg                                              >  1:2244255/1‑151 (MQ=255)

                                                                                                    cAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGc                                             >  1:804946/1‑151 (MQ=255)

                                                                                                    cAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGc                                             >  1:643653/1‑151 (MQ=255)

                                                                                                     aaaTATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGcc                                            <  1:3149435/151‑1 (MQ=255)

                                                                                                     aaaTATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGcc                                            >  1:270322/1‑151 (MQ=255)

                                                                                                      aaTATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCa                                           >  1:450980/1‑151 (MQ=255)

                                                                                                       atatTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAg                                          >  1:910249/1‑151 (MQ=255)

                                                                                                        tatTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGt                                         >  1:77410/1‑151 (MQ=255)

                                                                                                        tatTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGt                                         <  1:2689375/151‑1 (MQ=255)

                                                                                                        tatTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGt                                         >  1:2739246/1‑151 (MQ=255)

                                                                                                          ttCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCg                                       <  1:152962/151‑1 (MQ=255)

                                                                                                          ttCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCg                                       <  1:2419997/151‑1 (MQ=255)

                                                                                                                ttCGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAAtt                                 >  1:1362592/1‑151 (MQ=255)

                                                                                                                  cGTATTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATtat                               >  1:1306387/1‑151 (MQ=255)

                                                                                                                     aTTTCCTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACt                            >  1:1308479/1‑151 (MQ=255)

                                                                                                                         ccTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTcc                        >  1:1790510/1‑151 (MQ=255)

                                                                                                                         ccTTTGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAAGTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTcc                        >  1:3323994/1‑151 (MQ=255)

                                                                                                                           tttGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAg                      <  1:77409/151‑1 (MQ=255)

                                                                                                                             tGCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGAt                    >  1:3453147/1‑151 (MQ=255)

                                                                                                                              gCTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGATa                   <  1:65799/151‑1 (MQ=255)

                                                                                                                               cTCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGATaa                  <  1:2312799/151‑1 (MQ=255)

                                                                                                                                tCAAAGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGATAAt                 <  1:2723284/151‑1 (MQ=255)

                                                                                                                                    aGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGATAATCaaa             >  1:2878667/1‑151 (MQ=255)

                                                                                                                                    aGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGATAATCaaa             >  1:2456152/1‑151 (MQ=255)

                                                                                                                                    aGTTGCCTTTTT‑GAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGATAATCaaa             >  1:464540/1‑151 (MQ=255)

                                                                                                                                      ttGCCTTTTT‑GAGGCACAATGACTGATGCTGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCTTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGATAATCAAAAt           <  1:945931/151‑1 (MQ=255)

                                                                                                                                        tgcctttttGAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGATAATCAAAAtt          <  1:1337721/147‑1 (MQ=255)

                                                                                                                                        tgcctttttGAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGATAATCAAAAtt          <  1:2578597/147‑1 (MQ=255)

                                                                                                                                          cctttttGAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGATAATCAAAATTTg        <  1:824820/149‑1 (MQ=255)

                                                                                                                                           ctttttGAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGATAATCAAAATTTgg       <  1:280848/150‑1 (MQ=255)

                                                                                                                                               ttGAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGATAATCAAAATTTGggttg   <  1:1243869/151‑1 (MQ=255)

                                                                                                                                                tGAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGATAATCAAAATTTGggttgg  >  1:2728629/1‑151 (MQ=255)

GATTCGTATTCATTTATTATTATGCGGTGAATATCCCTGCTCATGCTGCCTCCTTGTTTCCCATTACATGTAAGGTTTATGCATTTTCATAAAGACTGTTCAAATATTCGTCTTCGTATTTCCTTTGCTCAAAGTTGCCTTTTTTGAGGCACAATGACTGATGCGGATACGGAACTTGTCCTGGAATTTTTCTTTTTCCGTGCTGCCTCATACGACATTATTTCTTCCTTGGTTTTGAAATTGTTGTTGTGCCAGTCGGTAATTATACTGTCCAGATAATCAAAATTTGGGTTGG  >  CP002416/54564‑54858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`